| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 589939 | NA (NA) | 74 (0.950) | 50/98 | 0.3 | NA | noncoding (384/768 nt) | IS1 | repeat region |
| ? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
Only 100 of 110 total aligned reads displayed.
CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/589890‑589939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC < REL606/590471‑590424 CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:3805877/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:5935019/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:1270909/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:1271418/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:5897532/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:6073160/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:546230/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:1762205/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:6466961/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:5388834/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:5388237/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:5384186/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:7288097/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:6545979/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:5058113/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:666591/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:4872839/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:4414124/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:4341160/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:4242270/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:6051893/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:2936545/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:2943033/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:3790025/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT > 1:3280133/1‑51CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGNT < 1:7055665/51‑1CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACAGTT < 1:7223651/51‑1 GTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTG > 1:6061225/1‑51 GTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTG > 1:5079989/1‑51 GTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTG > 1:3037404/1‑51 GTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTG > 1:5215899/1‑51 GTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:2171154/50‑1 TAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGT > 1:6217122/1‑51 TAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGT > 1:1661367/1‑51 AAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:197797/48‑1 AACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACT < 1:6685027/51‑1 AACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACT > 1:3243968/1‑51 CAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGA > 1:5665728/1‑51 AGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGAC > 1:3648127/1‑51 CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCC > 1:3815187/1‑51 CAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCC < 1:3265290/51‑1 AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCA > 1:6072247/1‑51 AGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCA > 1:3479657/1‑51 GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAA < 1:3453363/51‑1 GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAA < 1:7100613/51‑1 GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAA < 1:6692318/51‑1 GCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAA > 1:4763893/1‑51 CGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAA > 1:2488914/1‑51 CTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAA < 1:4009110/51‑1 CTGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAA < 1:2858008/51‑1 TGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAG > 1:318990/1‑51 TGGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAG < 1:6820837/51‑1 GGCGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAA < 1:2304988/46‑1 GGCGCGATTTAGCCCCGACATAGCCCCACTGTTGT < 1:908342/35‑1 GGCGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:272071/33‑1 CGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTG > 1:3261443/1‑51 CGCGATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGT < 1:911831/49‑1 CGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:1208934/31‑1 CGCGATTTAGCCCCGACATAGCCCCACTGTT < 1:502215/31‑1 GATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGAC > 1:5041862/1‑51 GATTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGAC > 1:4191653/1‑51 TTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAG < 1:7100542/51‑1 TTTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAG < 1:678246/51‑1 TTAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGT > 1:2045250/1‑51 TAGCCCCGACATAGCCCCACTGTTGTACTGACCCCCAAAAGTTGGACAGTT > 1:2778966/1‑51 TAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTT > 1:5103844/1‑51 TAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTT < 1:7186740/51‑1 TAGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTT > 1:163338/1‑51 AGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTA > 1:5782367/1‑51 AGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:3769748/51‑1 AGCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:2194637/51‑1 GCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAA > 1:4955275/1‑51 GCCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAA < 1:4570061/51‑1 CCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAA < 1:5490573/51‑1 CCCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTA < 1:2291252/49‑1 CCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC > 1:6843340/1‑51 CCCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAAC < 1:4622046/51‑1 CCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA > 1:93519/1‑51 CCGACATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACA < 1:3015070/51‑1 CATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG > 1:3318435/1‑51 CATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG > 1:4615632/1‑51 CATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAG > 1:2724732/1‑51 ATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 1:4075087/1‑51 ATAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG > 1:5869512/1‑51 TAGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGC > 1:2355617/1‑51 AGCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA > 1:4481380/1‑51 GCCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT < 1:379321/51‑1 CCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA < 1:4683894/51‑1 CCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATA > 1:5326613/1‑51 CCCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA > 1:5456526/1‑49 CCCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT > 1:6307411/1‑51 CCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 1:3521667/51‑1 CCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA < 1:4970688/51‑1 CCACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATA > 1:5841224/1‑51 CACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAG < 1:626672/51‑1 ACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG > 1:5817741/1‑51 ACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG < 1:2257437/51‑1 ACTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG < 1:1383985/51‑1 CTGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGT > 1:1233344/1‑51 TGTTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC > 1:5567093/1‑51 CGTAAAACAGCCAGCGCTGGCGCGATTTAGCCCCGACATAGCCCCACTGTt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/589890‑589939‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC < REL606/590471‑590424 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |