| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 589939 | NA (NA) | 74 (0.950) | 50/98 | 0.3 | NA | noncoding (384/768 nt) | IS1 | repeat region |
| ? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
Only 100 of 177 total aligned reads displayed.
GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCT > REL606/590424‑590521 | gACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACat < 1:4459126‑M2/51‑3 (MQ=255)gACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACat > 1:5718405‑M2/1‑49 (MQ=255) ccTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACattg < 1:4892083‑M2/51‑5 (MQ=255) cTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg > 1:521504/1‑51 (MQ=40) cTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg > 1:3065490/1‑51 (MQ=40) cTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg < 1:6853844/51‑1 (MQ=38) cTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTgg < 1:3565644/51‑1 (MQ=38) tataTGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACattggg < 1:5796022‑M2/51‑7 (MQ=255) tataTGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTggg > 1:3114948/1‑51 (MQ=40) tataTGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTggg > 1:2955806/1‑51 (MQ=255) atatGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACattgggg < 1:4269252‑M2/51‑8 (MQ=255) atatGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTgggg > 1:2907177/1‑51 (MQ=255) atatGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTgggg < 1:5051274/51‑1 (MQ=255) tatGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc > 1:806623/1‑51 (MQ=255) tatGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGc < 1:5231565/51‑1 (MQ=255) atGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCt < 1:1183745/51‑1 (MQ=255) tGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACattggggctt > 1:4239035‑M2/1‑41 (MQ=255) gCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACattggggctta > 1:6398612‑M2/1‑40 (MQ=255) gCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGc > 1:1944371/1‑51 (MQ=255) gCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGc > 1:6760887/1‑51 (MQ=255) ccTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACattggggcttaa > 1:5401252‑M2/1‑39 (MQ=255) cTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACattggggcttaag > 1:5934439‑M2/1‑38 (MQ=255) cTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCa < 1:3328180/51‑1 (MQ=255) cTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCa > 1:1425287/1‑51 (MQ=255) cTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCa < 1:6136895/51‑1 (MQ=255) tCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCAc > 1:4980311/1‑51 (MQ=255) cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcg < 1:6863231‑M2/51‑16 (MQ=255) cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACt > 1:1029547/1‑51 (MQ=255) gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTc < 1:4404481/51‑1 (MQ=255) tgtTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTcc < 1:1939752/51‑1 (MQ=255) gtTTAACTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgc > 1:1003660‑M2/1‑33 (MQ=255) gtTTAACTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgc < 1:3779000‑M2/51‑19 (MQ=255) gtTTAACTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgc > 1:4332795‑M2/1‑33 (MQ=255) gtTTAACTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgc < 1:367985‑M2/51‑19 (MQ=255) tttAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCaa > 1:2078303/1‑51 (MQ=255) tttAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCaa < 1:5489423/51‑1 (MQ=255) tttAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCaa > 1:2287266/1‑51 (MQ=255) tttAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCaa > 1:3679473/1‑51 (MQ=255) tttAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCaa > 1:6349604/1‑51 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcg > 1:4495882‑M2/1‑31 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCaaa < 1:6607591/51‑1 (MQ=255) ttAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCaaa > 1:6679653/1‑51 (MQ=255) tAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAAc > 1:2575498/1‑51 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgcgctt < 1:2780657‑M2/51‑23 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgcgctt > 1:431082‑M2/1‑29 (MQ=255) aaCTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAAcc < 1:2756453/51‑1 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgcgcttc > 1:6364666‑M2/1‑28 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgcgcttc > 1:2301680‑M2/1‑28 (MQ=255) aCTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAAccc < 1:4954973/51‑1 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgcgcttca < 1:2657139‑M2/51‑25 (MQ=255) cTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCg > 1:1585421/1‑51 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgcgcttcaa < 1:3155785‑M2/51‑26 (MQ=255) tGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGa > 1:6005408/1‑51 (MQ=255) gTCCAACTTTTTGGGGTCAGTACACattggggcttaagcgcgcgcttcaac < 1:1895223‑M2/51‑27 (MQ=255) tCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAAc > 1:2186426/1‑51 (MQ=255) ccAACTTTTTGGGGTCAGTACACattggggcttaagcgcgcgcttcaactc > 1:3645430‑M2/1‑23 (MQ=255) cAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACaa < 1:4678331/51‑1 (MQ=255) aaCTTTTTGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcac < 1:173204‑M2/51‑31 (MQ=255) aaCTTTTTGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcac < 1:5822169‑M2/51‑31 (MQ=255) aaCTTTTTGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcac < 1:6938500‑M2/51‑31 (MQ=255) aCTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAAtt < 1:4733316/51‑1 (MQ=255) aCTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAAtt < 1:5684127/51‑1 (MQ=255) cTTTTTGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcaccc < 1:4758722‑M2/51‑33 (MQ=255) tttttGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcacccc < 1:6836304‑M2/51‑34 (MQ=255) ttttGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcacccct < 1:2368012‑M2/51‑35 (MQ=255) ttttGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAAt < 1:4037911/47‑1 (MQ=255) tttGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcacccctg > 1:6473391‑M2/1‑16 (MQ=255) tttGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcacccctg < 1:6498329‑M2/51‑36 (MQ=255) tttGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcacccctg > 1:1710227‑M2/1‑16 (MQ=255) tttGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcacccctg < 1:7153920‑M2/51‑36 (MQ=255) tGGGGTCAGTACACattggggcttaagcgcgcgcttcaactcacccctgca > 1:404386‑M2/1‑14 (MQ=255) tGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATg < 1:7029537/51‑1 (MQ=255) tGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATg < 1:4531048/51‑1 (MQ=255) ggggTCAGTACACattggggcttaagcgcgcgcttcaactcacccctgcaa < 1:1245550‑M2/51‑39 (MQ=255) ggggTCAGTACACattggggcttaagcgcgcgcttcaactcacccctgcaa > 1:2018575‑M2/1‑13 (MQ=255) gggTCAGTACACattggggcttaagcgcgcgcttcaactcacccctgcaat < 1:2669388‑M2/51‑40 (MQ=255) gggTCAGTACACattggggcttaagcgcgcgcttcaactcacccctgcaat > 1:1872016‑M2/1‑12 (MQ=255) gggTCAGTACACattggggcttaagcgcgcgcttcaactcacccctgcaat < 1:7160641‑M2/51‑40 (MQ=255) gggTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGt > 1:2074329/1‑51 (MQ=255) ggTCAGTACACattggggcttaagcgcgcgcttcaactcacccctgcaata > 1:5786429‑M2/1‑11 (MQ=255) ggTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTa < 1:1638856/51‑1 (MQ=255) gTCAGTACACattggggcttaagcgcgcgcttcaactcacccctgcaatat > 1:4807175‑M2/1‑10 (MQ=255) gTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAg > 1:2109652/1‑51 (MQ=255) tCAGTACACattggggcttaagcgcgcgcttcaactcacccctgcaatatt < 1:3106259‑M2/51‑43 (MQ=255) cAGTACACattggggcttaagcgcgcgcttcaactcacccctgcaatattt < 1:5358736‑M2/51‑44 (MQ=255) cAGTACACattggggcttaagcgcgcgcttcaactcacccctgcaatattt > 1:564689‑M2/1‑8 (MQ=255) aGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTcc > 1:3829854/1‑51 (MQ=255) aGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTcc > 1:3866848/1‑51 (MQ=255) tACACattggggcttaagcgcgcgcttcaactcacccctgcaatattttgt < 1:1970334‑M2/51‑47 (MQ=255) tACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCct > 1:1277879/1‑51 (MQ=255) acacattggggcttaagcgcgcgcttcaactcacccctgcaatattttgtc > 1:4023743‑M2/1‑4 (MQ=255) acacattggggcttaagcgcgcgcttcaactcacccctgcaatattttgtc > 1:7255014‑M2/1‑4 (MQ=255) acacattggggcttaagcgcgcgcttcaactcacccctgcaatattttgtc > 1:2828674‑M2/1‑4 (MQ=255) cacattggggcttaagcgcgcgcttcaactcacccctgcaatattttgtcc > 1:3965707‑M2/1‑3 (MQ=255) cacattggggcttaagcgcgcgcttcaactcacccctgcaatattttgtcc > 1:4006105‑M2/1‑3 (MQ=255) cacattggggcttaagcgcgcgcttcaactcacccctgcaatattttgtcc < 1:5021016‑M2/51‑49 (MQ=255) acattggggcttaagcgcgcgcttcaactcacccctgcaatattttgtcca < 1:3726405‑M2/51‑50 (MQ=255) acCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCcttct > 1:1281307/1‑51 (MQ=255) acCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCcttct > 1:4572930/1‑51 (MQ=255) acCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCcttct > 1:916885/1‑51 (MQ=255) | GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACCCTGGGGCTGCCACTCCAAACCCGAACAATTTGGATGGTAGTCCCTTCT > REL606/590424‑590521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |