Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_007779 | 3,261,134 | Δ1,199 bp | insH–[tdcD] | insH, [tdcD] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_007779 | 3261134–3262328 | 3262332 | 5–1199 | 29 [0] | [0] 29 | insH–[tdcD] | insH,[tdcD] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_007779 | = 3261133 | 0 (0.000) | 29 (0.650) | 26/192 | 0.7 | 100% | intergenic (‑59/‑69) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
? | NC_007779 | 3262333 = | 0 (0.000) | coding (1183/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic |
CAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCATTTTCACTGGAAACAATTC > NC_007779/3262235‑3262428 | ggcgtacagcttatcgctggtatcaatatctaccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCtt > 1:482823‑M2/99‑101 (MQ=255) gcgtacagcttatcgctggtatcaatatctaccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCttt < 3:1359145‑M2/4‑1 (MQ=255) gtacagcttatcgctggtatcaatatctaccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGc < 3:907958‑M2/6‑1 (MQ=255) gcttctcgctggtatcactctctaccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTaaa > 4:127414‑M2/91‑101 (MQ=255) ttatcgctggtatcaatatctaccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAaatg < 3:1355454‑M2/13‑1 (MQ=255) cgctggtatcaatatctaccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAaatgaatg < 3:558290‑M2/17‑1 (MQ=255) gtatcaatatctaccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATc > 3:191394‑M2/80‑101 (MQ=255) caatatctaccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCaaa < 3:826502‑M2/26‑1 (MQ=255) caatatctaccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCaaa < 3:787587‑M2/26‑1 (MQ=255) tctaccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAAt < 3:1263050‑M2/31‑1 (MQ=255) ccttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCAtt < 3:1246230‑M2/35‑1 (MQ=255) cttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCAttt < 1:1478007‑M2/36‑1 (MQ=255) cttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcggtaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCAttt > 3:284854‑M2/66‑101 (MQ=255) ttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCAtttt > 2:91564‑M2/65‑101 (MQ=255) ttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCAtttt < 1:947515‑M2/37‑1 (MQ=255) ttcatgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCAtttt < 3:484371‑M2/37‑1 (MQ=255) atgaaaaataatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTttc < 1:1890‑M2/40‑1 (MQ=255) taatctctctacaatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAg > 3:1513017‑M2/54‑101 (MQ=255) caatacttcaactaaattatgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACg > 3:435358‑M2/43‑101 (MQ=255) atgcaaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCa < 3:1489769‑M2/77‑1 (MQ=255) caaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCAttt > 3:752321‑M2/22‑101 (MQ=255) caaattctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCAttt > 3:742151‑M2/22‑101 (MQ=255) attctgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCATTTTCa > 3:1150035‑M2/19‑101 (MQ=255) tgcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCATTTTCACTgg > 1:935178‑M2/15‑101 (MQ=255) gcgggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCATTTTCACTGGa > 1:637672‑M2/14‑101 (MQ=255) ggcgcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCACTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCATTTTCACTGGAAAc < 3:306678‑M2/91‑1 (MQ=255) gcgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCATTTTCACTGGAAACAAt > 1:1199629‑M2/8‑101 (MQ=255) cgttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCATTTTCACTGGAAACAAtt < 3:565228‑M2/95‑1 (MQ=255) gttaaCTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCATTTTCACTGGAAACAATTc > 3:1441435‑M2/6‑101 (MQ=255) | CAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAACTTTGCCTAAATGAATGGCATCCAAAGCAATCATTTTTTCTTCGTTAGTCGGAATAACGGCACAAATGACACGCGCATTTTCACTGGAAACAATTC > NC_007779/3262235‑3262428 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |