| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_007779 | 3,261,134 | Δ1,199 bp | insH–[tdcD] | insH, [tdcD] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 3261134–3262328 | 3262332 | 5–1199 | 29 [0] | [0] 29 | insH–[tdcD] | insH,[tdcD] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 3261133 | 0 (0.000) | 29 (0.650) | 26/192 | 0.7 | 100% | intergenic (‑59/‑69) | tdcE/insH | pyruvate formate‑lyase 4/2‑ketobutyrate formate‑lyase/IS5 element protein |
| ? | NC_007779 | 3262333 = | 0 (0.000) | coding (1183/1296 nt) | tdcD | propionate kinase/acetate kinase C, anaerobic | |||||
GGCGTACAGCTTATCGCTGGTATCAATATCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACA > NC_007779/3261036‑3261229 | ggCGTACAGCTTATCGCTGGTATCAATATCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActt > 1:482823‑M1/1‑98 (MQ=255) gCGTACAGCTTATCGCTGGTATCAATATCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActtt < 3:1359145‑M1/101‑5 (MQ=255) gTACAGCTTATCGCTGGTATCAATATCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgc < 3:907958‑M1/101‑7 (MQ=255) gCTTCTCGCTGGTATCACTCTCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaa > 4:127414‑M1/1‑90 (MQ=255) ttATCGCTGGTATCAATATCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatg < 3:1355454‑M1/101‑14 (MQ=255) cGCTGGTATCAATATCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatg < 3:558290‑M1/101‑18 (MQ=255) gTATCAATATCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatc > 3:191394‑M1/1‑79 (MQ=255) cAATATCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaa < 3:826502‑M1/101‑27 (MQ=255) cAATATCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaa < 3:787587‑M1/101‑27 (MQ=255) tCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaat < 3:1263050‑M1/101‑32 (MQ=255) ccTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcatt < 3:1246230‑M1/101‑36 (MQ=255) cTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattt < 1:1478007‑M1/101‑37 (MQ=255) cTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGGTAActttgcctaaatgaatggcatccaaagcaatcattt > 3:284854‑M1/1‑65 (MQ=255) ttCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcatttt > 2:91564‑M1/1‑64 (MQ=255) ttCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcatttt < 1:947515‑M1/101‑38 (MQ=255) ttCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcatttt < 3:484371‑M1/101‑38 (MQ=255) aTGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttc < 1:1890‑M1/101‑41 (MQ=255) taatCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttag > 3:1513017‑M1/1‑53 (MQ=255) cAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacg > 3:435358‑M1/1‑42 (MQ=255) aTGCAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaatgacacgcgca < 3:1489769‑M1/101‑78 (MQ=255) cAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaatgacacgcgcattt > 3:752321‑M1/1‑21 (MQ=255) cAAATTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaatgacacgcgcattt > 3:742151‑M1/1‑21 (MQ=255) aTTCTGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaatgacacgcgcattttca > 3:1150035‑M1/1‑18 (MQ=255) tGCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaatgacacgcgcattttcactgg > 1:935178‑M1/1‑14 (MQ=255) gCGGGCGCGTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaatgacacgcgcattttcactgga > 1:637672‑M1/1‑13 (MQ=255) ggCGCGTTAActttgcctaaatgaatggcatccaaagcaatcactttttcttcgttagtcggaataacggcacaaatgacacgcgcattttcactggaaac < 3:306678‑M1/101‑92 (MQ=255) gcgTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaatgacacgcgcattttcactggaaacaat > 1:1199629‑M1/1‑7 (MQ=255) cgTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaatgacacgcgcattttcactggaaacaatt < 3:565228‑M1/101‑96 (MQ=255) gTTAActttgcctaaatgaatggcatccaaagcaatcattttttcttcgttagtcggaataacggcacaaatgacacgcgcattttcactggaaacaattc > 3:1441435‑M1/1‑5 (MQ=255) | GGCGTACAGCTTATCGCTGGTATCAATATCTACCTTCATGAAAAATAATCTCTCTACAATACTTCAACTAAATTATGCAAATTCTGCGGGCGCGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACA > NC_007779/3261036‑3261229 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |