| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_007779 | 2,411,459 | Δ776 bp | insB–insA | insB, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 2411459–2412225 | 2412234 | 10–776 | 24 [0] | [0] 24 | insB–insA | insB,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 2411458 | 0 (0.000) | 23 (0.540) | 21/182 | 0.9 | 100% | intergenic (‑147/+15) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | 2412235 = | 0 (0.000) | intergenic (‑65/‑772) | insA/yfbQ | IS1 element protein/aminotransferase | |||||
TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATG > NC_007779/2412135‑2412329 | acacacaaacaagcaattccatttgtaatgtgcctccctggcagtttcatccggaacccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcga < 1:691833‑M2/1‑1 (MQ=255) cacacaaacaagcaattccatttgtaaggtgcctccctgggagtttcacccggagcccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgAc < 1:234900‑M2/2‑1 (MQ=255) caaacaagcaattccatttgtaatgtgcctccctggcagtttcatccggaacccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTcac < 3:821096‑M2/6‑1 (MQ=255) aacaagcaattccatttgtaatgtgcctccctggcagtttcatccggaacccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACAt < 2:25792‑M2/8‑1 (MQ=255) gcaattccatttgtaatgtgcctccctggcagtttcatccggaacccgtacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTc < 1:1162173‑M2/13‑1 (MQ=255) caattccatttgtaatgtgcctccctggcagtttcatccggaacccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTcc < 1:772418‑M2/14‑1 (MQ=255) tccatttgtaatgtgcctccctggcagtttcatccggaacccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTta < 3:919409‑M2/18‑1 (MQ=255) atgtgcctccctggcagtttcatccggaacccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGa > 1:1403780‑M2/74‑101 (MQ=255) gcctccctggcagtttcatccggaacccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTa > 1:993185‑M2/70‑101 (MQ=255) cctggcagtttcatccggaacccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATca < 1:1274737‑M2/37‑1 (MQ=255) tttcatccggaacccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat > 3:882003‑M2/57‑101 (MQ=255) ggaacccggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAg > 3:1235245‑M2/49‑101 (MQ=255) cggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg < 1:120287‑M2/59‑1 (MQ=255) ggacgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGc < 1:268676‑M2/60‑1 (MQ=255) acgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCat > 1:931835‑M2/40‑101 (MQ=255) cgaaagtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCata < 3:1447063‑M2/63‑1 (MQ=255) gtaaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTAt < 3:358017‑M2/68‑1 (MQ=255) aaaaatgcatatgagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTa < 3:1417924‑M2/70‑1 (MQ=255) attagttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTactcac > 2:140115‑M2/22‑101 (MQ=255) agttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCActct > 3:1451430‑M2/19‑101 (MQ=255) ttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCttt > 3:1210459‑M2/17‑101 (MQ=255) ttgcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCttt > 2:5169‑M2/17‑101 (MQ=255) gcactaaaaaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTc < 2:105027‑M2/87‑1 (MQ=255) aaagcgACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATg > 1:167922‑M2/7‑101 (MQ=255) | TGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCATATCTATTAAGTTACTCACTCTTTTCTATTTATG > NC_007779/2412135‑2412329 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |