| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_007779 | 2,411,459 | Δ776 bp | insB–insA | insB, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_007779 | 2411459–2412225 | 2412234 | 10–776 | 24 [0] | [0] 24 | insB–insA | insB,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 2411458 | 0 (0.000) | 23 (0.540) | 21/182 | 0.9 | 100% | intergenic (‑147/+15) | lrhA/insB | DNA‑binding transcriptional repressor/IS1 element protein |
| ? | NC_007779 | 2412235 = | 0 (0.000) | intergenic (‑65/‑772) | insA/yfbQ | IS1 element protein/aminotransferase | |||||
ACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTT > NC_007779/2411359‑2411553 | acacacaAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGa < 1:691833‑M1/101‑2 (MQ=255) cacacaAACAAGCAATTCCATTTGTAAGGTGCCTCCCTGGGAGTTTCACCCGGAGCCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGac < 1:234900‑M1/101‑3 (MQ=255) caaacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcac < 3:821096‑M1/101‑7 (MQ=255) aacaaGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacat < 2:25792‑M1/101‑9 (MQ=255) gCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGTACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttc < 1:1162173‑M1/101‑14 (MQ=255) cAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttcc < 1:772418‑M1/101‑15 (MQ=255) tCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgtta < 3:919409‑M1/101‑19 (MQ=255) aTGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctga > 1:1403780‑M1/1‑73 (MQ=255) gCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagta > 1:993185‑M1/1‑69 (MQ=255) ccTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatca < 1:1274737‑M1/101‑38 (MQ=255) tttCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatat > 3:882003‑M1/1‑56 (MQ=255) ggAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcag > 3:1235245‑M1/1‑48 (MQ=255) cGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcg < 1:120287‑M1/101‑60 (MQ=255) ggACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgc < 1:268676‑M1/101‑61 (MQ=255) aCGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcat > 1:931835‑M1/1‑39 (MQ=255) cGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcata < 3:1447063‑M1/101‑64 (MQ=255) gTAAAAATGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctat < 3:358017‑M1/101‑69 (MQ=255) aaaaaTGCATATGAGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctatta < 3:1417924‑M1/101‑71 (MQ=255) attagttGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcac > 2:140115‑M1/4‑21 (MQ=255) aGTTGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactct > 3:1451430‑M1/1‑18 (MQ=255) ttGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttt > 3:1210459‑M1/1‑16 (MQ=255) ttGCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttt > 2:5169‑M1/1‑16 (MQ=255) gCACTAAAAAAGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttc < 2:105027‑M1/101‑88 (MQ=255) aaaGCGactcacattgttccgttataatgcctgaagtagatcacagaatatatcttcagggatcgcatatctattaagttactcactcttttctatttatg > 1:167922‑M1/1‑6 (MQ=255) | ACACACAAACAAGCAATTCCATTTGTAATGTGCCTCCCTGGCAGTTTCATCCGGAACCCGGACGAAAGTAAAAATGCATATGAGTTGCACTAAAAAAGCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTT > NC_007779/2411359‑2411553 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |