BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	GFP_Plasmid_Sequ	2820 =	40418 (0.960)	5 (0.000)	4/174	103.2	0.014%	intergenic (–/–)	–/–	–/–
*	?	GFP_Plasmid_Sequ	= 2830	35364 (0.970)	5 (0.000)	4/174	103.2	0.014%	intergenic (–/–)	–/–	–/–
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 40846 total aligned reads displayed.

CGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTCG  >  GFP_Plasmid_Sequ/2720‑2920

  ggTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctg                                                                                                    >  3:783155/1‑101 (MQ=255)

    tttCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggc                                                                                                  >  1:762153/1‑101 (MQ=255)

        gCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttt                                                                                              >  3:453485/1‑101 (MQ=255)

        gCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttt                                                                                              >  1:854340/1‑101 (MQ=255)

         ccACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggcctttt                                                                                             >  1:946449/1‑101 (MQ=255)

          cACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTATGGTTCctggccttttg                                                                                            >  1:241189/1‑101 (MQ=255)

          cACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttg                                                                                            >  3:578685/1‑101 (MQ=255)

          cACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttg                                                                                            >  3:1197104/1‑101 (MQ=255)

          cACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttg                                                                                            >  3:177366/1‑101 (MQ=255)

           aCCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgc                                                                                           >  2:73033/1‑101 (MQ=255)

            ccTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgct                                                                                          >  1:1122438/1‑101 (MQ=255)

               ctGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggc                                                                                       >  3:1564555/1‑101 (MQ=255)

                tGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggcc                                                                                      <  3:843853/101‑1 (MQ=255)

                 gACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctnnncttttgctggcct                                                                                     <  1:1152940/101‑1 (MQ=255)

                 gACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggcct                                                                                     >  3:1385092/1‑101 (MQ=255)

                 gACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggcct                                                                                     >  1:1090620/1‑101 (MQ=255)

                 gACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggcct                                                                                     <  1:1274227/101‑1 (MQ=255)

                  aCTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggcctt                                                                                    >  1:1395337/1‑101 (MQ=255)

                    ttGATCGTCGATTTTTGTGATGCTCGTCAGGGGGCCGGAGCCTATGGAAAAACGCCAGCAACGCGGCTTTTTTACGGTTCctggccttttgctggccttct                                                                                  >  3:513976/1‑99 (MQ=255)

                     tGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggccttttg                                                                                 <  3:150411/101‑1 (MQ=255)

                     tGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCctggccttttgctggccttttg                                                                                 <  1:979689/101‑1 (MQ=255)

                      gAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCtggccttttgctggccttttgc                                                                                <  3:697307/101‑1 (MQ=255)

                      gAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCtggccttttgctggccttttgc                                                                                >  3:1443496/1‑101 (MQ=255)

                        gCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTc                                                                              >  2:22502/1‑101 (MQ=255)

                          gTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTcac                                                                            <  1:487955/101‑1 (MQ=255)

                           tCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTcaca                                                                           >  3:667887/1‑101 (MQ=255)

                            cGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACAt                                                                          <  3:481207/101‑1 (MQ=255)

                             gATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATg                                                                         >  3:969328/1‑101 (MQ=255)

                             gATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATg                                                                         >  1:73132/1‑101 (MQ=255)

                               tttttGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTc                                                                       <  1:180045/101‑1 (MQ=255)

                                ttttGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTcc                                                                      <  1:1059281/101‑1 (MQ=255)

                                    gtgAGGCGCGTGAGGGGGGCGGAGCCTATAGAAAAGGGGCAGCAACGCGGCCTGTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGGCCTTTc                                                                  <  1:1582824/101‑1 (MQ=255)

                                     tgATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTcc                                                                 <  3:548338/101‑1 (MQ=255)

                                      gATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCt                                                                >  3:236012/1‑101 (MQ=255)

                                       aTGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTg                                                               <  1:701914/101‑1 (MQ=255)

                                         gCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCg                                                             >  1:609331/1‑101 (MQ=255)

                                          cTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGt                                                            >  3:388052/1‑101 (MQ=255)

                                          cTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGt                                                            >  1:130573/1‑101 (MQ=255)

                                           tCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGtt                                                           >  1:1000064/1‑101 (MQ=255)

                                           tCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGtt                                                           <  3:1104901/101‑1 (MQ=255)

                                            cGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTa                                                          >  1:917494/1‑101 (MQ=255)

                                            cGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTCGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGCTa                                                          >  3:104170/1‑101 (MQ=255)

                                                 ggggggCGGAGCCTATGGAAAAACGCCAGCAAAGCGGCCTTTTTACGGGTCCTGGGCTTTTGCTGGGCTTTTGCTCACATGTGCTTTCCTGCGGTATtccc                                                     >  3:813254/1‑101 (MQ=255)

                                                  gggggCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCt                                                    <  3:265992/101‑1 (MQ=255)

                                                  gggggCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCt                                                    <  3:1070282/101‑1 (MQ=255)

                                                  gggggCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCt                                                    <  3:356674/101‑1 (MQ=255)

                                                  gggggCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCt                                                    >  1:272773/1‑101 (MQ=255)

                                                   ggggCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTg                                                   <  1:886544/101‑1 (MQ=255)

                                                   ggggCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTg                                                   <  1:1363156/101‑1 (MQ=255)

                                                     ggCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGAt                                                 <  3:1257226/101‑1 (MQ=255)

                                                      gCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGAtt                                                <  3:206819/101‑1 (MQ=255)

                                                       cGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTc                                               <  1:333725/101‑1 (MQ=255)

                                                        ggAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTNCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCt                                              >  3:1351912/1‑101 (MQ=255)

                                                        ggAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCt                                              >  1:1183401/1‑101 (MQ=255)

                                                        ggAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCt                                              >  1:1457618/1‑101 (MQ=255)

                                                        ggAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCt                                              >  3:1472645/1‑101 (MQ=255)

                                                        ggAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCt                                              >  1:579308/1‑101 (MQ=255)

                                                        ggAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCt                                              >  1:124443/1‑101 (MQ=255)

                                                          aGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCtgt                                            >  3:297157/1‑101 (MQ=255)

                                                           gCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCtgtg                                           <  3:875840/101‑1 (MQ=255)

                                                           gCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCtgtg                                           >  3:1134589/1‑101 (MQ=255)

                                                            ccTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTTCGTTATCCCCTGATTCTGTgg                                          >  3:610039/1‑101 (MQ=255)

                                                            ccTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTgg                                          >  1:366877/1‑101 (MQ=255)

                                                             cTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGa                                         >  3:420296/1‑101 (MQ=255)

                                                              tATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGAt                                        <  1:457455/101‑1 (MQ=255)

                                                                tGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATaa                                      >  3:752606/1‑101 (MQ=255)

                                                                 ggAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAAc                                     <  3:1165296/101‑1 (MQ=255)

                                                                 ggAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGAGGCGGTGGATAAc                                     <  4:148073/101‑1 (MQ=255)

                                                                   aaaaaCGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCg                                   >  1:142740/1‑101 (MQ=255)

                                                                    aaaaCGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGt                                  <  1:425178/101‑1 (MQ=255)

                                                                     aaaCGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTa                                 >  1:1334730/1‑101 (MQ=255)

                                                                      aaCGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTAt                                <  2:120244/101‑1 (MQ=255)

                                                                       aCGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTAtt                               <  1:209953/101‑1 (MQ=255)

                                                                         gCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTAc                             >  3:638263/1‑101 (MQ=255)

                                                                          ccAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTAcc                            <  3:32829/101‑1 (MQ=255)

                                                                          ccAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTAcc                            >  1:1213011/1‑101 (MQ=255)

                                                                           cAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCg                           >  3:153355/1‑101 (MQ=255)

                                                                           cAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCg                           >  1:548823/1‑101 (MQ=255)

                                                                             gCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGcc                         <  1:15202/101‑1 (MQ=255)

                                                                              cAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCt                        <  3:128842/101‑1 (MQ=255)

                                                                                    ggCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagt                  >  1:302951/1‑101 (MQ=255)

                                                                                    ggCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagt                  <  3:131919/101‑1 (MQ=255)

                                                                                      ccTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgtgtga                <  1:517717/101‑1 (MQ=255)

                                                                                      ccTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtga                >  1:1490067/1‑101 (MQ=255)

                                                                                      ccTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtga                <  3:1595047/101‑1 (MQ=255)

                                                                                      ccTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTtgagtga                >  1:639652/1‑101 (MQ=255)

                                                                                         ttttACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCt             <  3:1014059/101‑1 (MQ=255)

                                                                                         ttttACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCt             <  1:823167/101‑1 (MQ=255)

                                                                                          tttACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTg            <  1:669104/101‑1 (MQ=255)

                                                                                            tACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGAt          <  3:1228032/101‑1 (MQ=255)

                                                                                             aCGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATa         >  1:396324/1‑101 (MQ=255)

                                                                                              cGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAc        >  1:79252/1‑101 (MQ=255)

                                                                                              cGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATAc        <  3:938418/101‑1 (MQ=255)

                                                                                                gTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCg      >  3:90653/1‑101 (MQ=255)

                                                                                                gTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCg      <  1:1029356/101‑1 (MQ=255)

                                                                                                gTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATGACCGNCGGGGAGGGAGCGGATActg      <  4:52067/101‑3 (MQ=255)

                                                                                                  tCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCt    <  1:1551238/101‑1 (MQ=255)

                                                                                                   ccTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTc   >  3:72386/1‑101 (MQ=255)

                                                                                                   ccTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTc   <  3:1415201/101‑1 (MQ=255)

                                                                                                   ccTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTAAGCTAATACCGCTc   <  4:100655/101‑1 (MQ=255)

CGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTCCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTCG  >  GFP_Plasmid_Sequ/2720‑2920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.