| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | ADP1‑WT | 1722721 = | 0 (0.000) | 36 (2.070) | 30/250 | 0.2 | 100% | coding (1536/2397 nt) | quiA | quinate/shikimate dehydrogenase [pyrroloquinoline‑quinone] (NAD(P)‑independent quinate dehydrogenase) |
| ? | pYTK001_with_tdk_kan | = 1688 | 0 (NA) | intergenic (–/+123) | –/CamR | –/– | |||||
ATCAGACTCTTTAAGTGTCTGATTACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < ADP1‑WT/1722838‑1722721‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTGAAAAAGCCGTTTCTGTAGTGAAGGAGAAAA < pYTK001_with_tdk_kan/1688‑1573 ATCAGACTCTTTAAGTGTCTGATTACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCC > 1:48888/1‑126 TCAGACTCTTTAAGTGTCTGATTACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCG > 2:47821/1‑126 GACTCTTTAAGTGTCTGATTACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCAT < 1:18236/126‑1 CTTTAAGTGTCTGATTACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTT < 2:111902/126‑1 TTTAAGTGTCTGATTACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTA > 2:369863/1‑126 TTTAAGTGTCTGATTACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTA > 2:168363/1‑126 TTAAGTGTCTGATTACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAG < 2:48825/126‑1 ACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAG > 1:413493/1‑126 ACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAG > 2:8396/1‑126 CAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCA > 1:469494/1‑126 TTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAA < 1:143591/126‑1 TTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAA > 1:281340/1‑126 TGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAA < 2:129761/126‑1 GCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAAT < 2:412895/126‑1 TGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTT > 2:177859/1‑126 ACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATAACAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATT > 1:277407/1‑126 TGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCA > 2:201379/1‑126 GTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGA > 2:246665/1‑126 GTTTTACTGTATTGTTCGCCAGGAATAACAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGA < 2:276991/126‑1 TTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGAT < 1:47881/126‑1 GTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAAT < 2:280916/126‑1 ATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATAC < 1:247045/126‑1 TTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACC > 1:377554/1‑126 TTGTTCGCCAGGAATATCAGCCACTTTAATTAGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACC > 1:416661/1‑126 TGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCA > 2:306983/1‑126 TGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCA > 1:46482/1‑126 CGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATT < 2:207364/126‑1 CGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATT < 1:15285/126‑1 AGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTG > 1:355707/1‑126 ATATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTGAAAA > 2:93799/1‑126 TATCAGCCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTGAAAAA < 2:363910/126‑1 CCACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTGAAAAAGCCGTT < 2:468816/126‑1 CACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTGAAAAAGCCGTTT < 1:370382/126‑1 CACTTTAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTGAAAAAGCCGTTT < 1:168612/126‑1 TAATTGGCTGCTCGATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTGAAAAAGCCGTTTCTGTA < 1:8407/126‑1 GATCACTTTACCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTGAAAAAGCCGTTTCTGTAGTGAAGGAGAAAA < 2:46426/126‑1 ATCAGACTCTTTAAGTGTCTGATTACCAATTTGCGGCATTTCAACTGAACGCGGCTGAGTTTTACTGTATTGTTCGCCAGGAATATCAGCCACTTTAATTGGCTGCTCGATCACTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < ADP1‑WT/1722838‑1722721‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAGCTCCGCATGCTTAGAAAAACTCATCGAGCATCAAATGAAACTGCAATTTATTCATATCAGGATTATCAATACCATATTTTTGAAAAAGCCGTTTCTGTAGTGAAGGAGAAAA < pYTK001_with_tdk_kan/1688‑1573 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |