<noautolink> ---+ Breseq Developer Notes In addition to the normal prerequisites for *breseq*, you will also need updated versions of these tools to work on *breseq* development. On Mac OS X, these can be installed using [[http://www.macports.org/][MacPorts]]. * [[http://mercurial.selenic.com/][Mercurial]] * [[http://www.gnu.org/software/automake/][automake]] * [[http://www.gnu.org/software/autoconf/][autoconf]] * [[http://www.gnu.org/software/libtool/][libtool]] To get started, first clone the *breseq* code repository. <code><div style="border-color: grey; border-style: solid; border-width: 1px; padding:1px;"> >hg clone http://barricklab.org/hg<br> </div></code> Then change into the breseq directory and run the bootstrap script. <code><div style="border-color: grey; border-style: solid; border-width: 1px; padding:1px;"> >./bootstrap<br> </div></code> This generates the usual configure script, so now you can: <code><div style="border-color: grey; border-style: solid; border-width: 1px; padding:1px;"> >./configure<br> >make<br> >make install<br> </div></code> In order to <code>make dist</code> you will also need to install: * [[http://sphinx.pocoo.org/][Sphinx]] Again, this can be done using [[http://www.macports.org/][MacPorts]] on Mac OS X.
This topic: Lab
>
WebHome
>
SoftwareList
>
ToolsBacterialGenomeResequencing
>
BreseqDevelopment
Topic revision: r2 - 2011-01-30 - JeffreyBarrick