Difference:
SoftwareList
(21 vs. 22)
Revision 22
2024-05-18 -
JeffreyBarrick
META TOPICPARENT
name="WebHome"
<-- Preferences start here
Set PAGETITLE = Barrick Lab :: Software
Preferences end here -->
Barrick Lab :: Software
Changed:
<
<
→ Also check out our code repository:
https://github.com/barricklab
>
>
→ Also check out our GitHub code repositories:
https://github.com/barricklab
pLannotate (Plasmid Annotation)
Automated annotation of engineered DNA sequences and plasmids.
Breseq (Bacterial Genome Resequencing)
Determine mutations in evolved bacteria from next-generation sequencing data.
OSTIR (Open Source Translation Initiation Rates)
Prediction of translation initiation rates in
E. coli
and other bacteria.
Evolutionary Failure Mode (EFM) Calculator
Predict hypermutable sites in an engineered DNA sequence or microbial genome.
Marker Divergence Experiments
Analyze neutral marker divergence experiments to measure evolvability.
RNA Structure Mutual Information
Predict interacting bases in an RNA alignment by estimating the phylogeny-corrected significance of mutual information between columns.
META FILEATTACHMENT
attachment="MI_icon.gif" attr="h" comment="" date="1230387418" name="MI_icon.gif" path="MI_icon.gif" size="5144" stream="MI_icon.gif" user="Main.JeffreyBarrick" version="1"
META FILEATTACHMENT
attachment="marker_divergence_icon.gif" attr="h" comment="" date="1263006598" name="marker_divergence_icon.gif" path="marker_divergence_icon.gif" size="3792" stream="marker_divergence_icon.gif" tmpFilename="/usr/tmp/CGItemp39235" user="JeffreyBarrick" version="3"
META FILEATTACHMENT
attachment="breseq_icon.gif" attr="h" comment="" date="1247863196" name="breseq_icon.gif" path="breseq_icon.gif" size="4651" stream="breseq_icon.gif" tmpFilename="/usr/tmp/CGItemp20868" user="JeffreyBarrick" version="1"
META FILEATTACHMENT
attachment="EFM_Calculator.png" attr="h" comment="" date="1425609310" name="EFM_Calculator.png" path="EFM_Calculator.png" size="12168" stream="EFM_Calculator.png" tmpFilename="/usr/tmp/CGItemp32006" user="JeffreyBarrick" version="1"
META FILEATTACHMENT
attachment="pLannotate.png" attr="h" comment="" date="1695209055" name="pLannotate.png" path="pLannotate.png" size="7719" user="JeffreyBarrick" version="2"
META FILEATTACHMENT
attachment="OSTIR.png" attr="h" comment="" date="1695224111" name="OSTIR.png" path="OSTIR.png" size="7047" user="JeffreyBarrick" version="2"
META TOPICMOVED
by="JeffreyBarrick" date="1695224496" from="Lab.ToolList" to="Lab.SoftwareList"
View topic
|
H
istory
:
r23
<
r22
<
r21
<
r20
|
More topic actions...
Copyright ©2025 Barrick Lab contributing authors. Ideas, requests, problems?
Send feedback