Difference: SoftwareList (19 vs. 20)

META TOPICPARENT	name="WebHome"

<-- Preferences start here
 

 Set PAGETITLE = Barrick Lab :: Sofware
 

Preferences end here -->

Barrick Lab :: Code

→ Also check out our code repository: https://github.com/barricklab

Added:

>
>

pLannotate (Plasmid Annotation)
Automated annotation of engineered DNA sequences and plasmids.

	Breseq (Bacterial Genome Resequencing) Determine mutations in evolved bacteria from next-generation sequencing data.
	Evolutionary Failure Mode (EFM) Calculator Predict hypermutable sites in an engineered DNA sequence or microbial genome.
	Marker Divergence Experiments Analyze neutral marker divergence experiments to measure evolvability.
	RNA Structure Mutual Information Predict interacting bases in an RNA alignment by estimating the phylogeny-corrected significance of mutual information between columns.

META FILEATTACHMENT	attachment="MI_icon.gif" attr="h" comment="" date="1230387418" name="MI_icon.gif" path="MI_icon.gif" size="5144" stream="MI_icon.gif" user="Main.JeffreyBarrick" version="1"
META FILEATTACHMENT	attachment="marker_divergence_icon.gif" attr="h" comment="" date="1263006598" name="marker_divergence_icon.gif" path="marker_divergence_icon.gif" size="3792" stream="marker_divergence_icon.gif" tmpFilename="/usr/tmp/CGItemp39235" user="JeffreyBarrick" version="3"
META FILEATTACHMENT	attachment="breseq_icon.gif" attr="h" comment="" date="1247863196" name="breseq_icon.gif" path="breseq_icon.gif" size="4651" stream="breseq_icon.gif" tmpFilename="/usr/tmp/CGItemp20868" user="JeffreyBarrick" version="1"
META FILEATTACHMENT	attachment="EFM_Calculator.png" attr="h" comment="" date="1425609310" name="EFM_Calculator.png" path="EFM_Calculator.png" size="12168" stream="EFM_Calculator.png" tmpFilename="/usr/tmp/CGItemp32006" user="JeffreyBarrick" version="1"

Added:

>
>

META FILEATTACHMENT	attachment="pLannotate.png" attr="h" comment="" date="1695209055" name="pLannotate.png" path="pLannotate.png" size="7719" user="JeffreyBarrick" version="2"