Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Protocol source: NEB (https://www.neb.com/protocols/2020/01/15/golden-gate-assembly-protocol-for-using-neb-golden-gate-assembly-kit-bsmbi-v2-neb-e1602)

Assembly Reaction

1. Calculate the mass (in ng) required for 50 fmol of vector and 100 fmol of insert using NEB's NEBioCalculator: https://nebiocalculator.neb.com/#!/dsdnaamt

2. Set up the following reaction mix:

Optionally, you may have high enough efficiency if inserting one PCR product into the entry vector with NEB's short protocol with no cycling instead of the longer protocol:

4. Transform 2 μL assembly reaction into Electrocompetent or Chemically Competent cells and plate on LB + Cam

Expected Results

• (If using pYTK001 as your entry vector) Multiple non-fluorescent colonies
  • Be sure to screen colonies for GFP expression on a blue light transilluminator, pick colonies that do not fluoresce!
• Cells containing properly assembled plasmids (confirmed through PCR and Sanger Sequencing)

If you are having repeated issues check out the Troubleshooting page!

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Protocol source: NEB (https://www.neb.com/protocols/2020/01/15/golden-gate-assembly-protocol-for-using-neb-golden-gate-assembly-kit-bsmbi-v2-neb-e1602)

Assembly Reaction

1. Calculate the mass (in ng) required for 50 fmol of vector and 100 fmol of insert using NEB's NEBioCalculator: https://nebiocalculator.neb.com/#!/dsdnaamt

2. Set up the following reaction mix:

Expected Results

• (If using pYTK001 as your entry vector) Multiple non-fluorescent colonies
  • Be sure to screen colonies for GFP expression on a blue light transilluminator, pick colonies that do not fluoresce!
• Cells containing properly assembled plasmids (confirmed through PCR and Sanger Sequencing)

If you are having repeated issues check out the Troubleshooting page!

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Protocol source: NEB (https://www.neb.com/protocols/2020/01/15/golden-gate-assembly-protocol-for-using-neb-golden-gate-assembly-kit-bsmbi-v2-neb-e1602)

Assembly Reaction

1. Calculate the mass (in ng) required for 50 fmol of vector and 100 fmol of insert using NEB's NEBioCalculator: https://nebiocalculator.neb.com/#!/dsdnaamt

2. Set up the following reaction mix:

Expected Results

• (If using pYTK001 as your entry vector) Multiple non-fluorescent colonies
  • Be sure to screen colonies for GFP expression on a blue light transilluminator, pick colonies that do not fluoresce!
• Cells containing properly assembled plasmids (confirmed through PCR and Sanger Sequencing)

If you are having repeated issues check out the Troubleshooting page!

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Protocol source: NEB (https://www.neb.com/protocols/2020/01/15/golden-gate-assembly-protocol-for-using-neb-golden-gate-assembly-kit-bsmbi-v2-neb-e1602)

Assembly Reaction

1. Calculate the mass (in ng) required for 50 fmol of vector and 100 fmol of insert using NEB's NEBioCalculator: https://nebiocalculator.neb.com/#!/dsdnaamt

2. Set up the following reaction mix:

• 2 μL of NEB 10× T4 DNA ligase buffer
• 1 μL of NEB Golden Gate Enzyme Mix (BsmBI-v2)
• x μL water up to 20 μL total

Expected Results

• (If using pYTK001 as your entry vector) Multiple non-fluorescent colonies
  • Be sure to screen colonies for GFP expression on a blue light transilluminator, pick colonies that do not fluoresce!
• Cells containing properly assembled plasmids (confirmed through PCR and Sanger Sequencing)

If you are having repeated issues check out the Troubleshooting page!

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly Reaction

• x μL water up to 20 μL total

Expected Results

• (If using pYTK001 as your entry vector) Multiple non-fluorescent colonies
  • Be sure to screen colonies for GFP expression on a blue light transilluminator, pick colonies that do not fluoresce!
• Cells containing properly assembled plasmids (confirmed through PCR and Sanger Sequencing)

If you are having repeated issues check out the Troubleshooting page!

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly Reaction

3. Transform 2 μL assembly reaction into Electrocompetent or Chemically Competent cells and plate on LB + Cam

Expected Results

• (If using pYTK001 as your entry vector) Multiple non-fluorescent colonies
  • Be sure to screen colonies for GFP expression on a blue light transilluminator, pick colonies that do not fluoresce!
• Cells containing properly assembled plasmids (confirmed through PCR and Sanger Sequencing)

If you are having repeated issues check out the Troubleshooting page!

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly Reaction

1. Set up the following reaction mix:

3. Transform 2 μL assembly reaction into Electrocompetent or Chemically Competent cells and plate on LB + Cam

Expected Results

• (If using pYTK001 as your entry vector) Multiple non-fluorescent colonies
  • Be sure to screen colonies for GFP expression on a blue light transilluminator, pick colonies that do not fluoresce!
• Cells containing properly assembled plasmids (confirmed through PCR and Sanger Sequencing)

If you are having repeated issues check out the Troubleshooting page!

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

• 10 fmol pYTK-001 plasmid = 17.7ng [try to keep volume to 1-2μL]
• 20 fmol of insert DNA = 650 * insert length * 20x10^-6 = X ng [try to keep volume to less than 10 μL]
• 2 μL of 10× T4 DNA ligase buffer (Promega)
• 1 μL of BsmBI
• 1 μL of T4 DNA ligase

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly reaction

Total volume will be 20 μL; You will need 10 fmol of entry vector and 20 fmol of your DNA insert(s).

• 10 fmol pYTK-001 plasmid = 17.7ng [try to keep volume to 1-2μL]
• 20 fmol of insert DNA = 650 * insert length * 20x10^-6 = X ng [try to keep volume to less than 10 μL]
• 2 μL of 10× T4 DNA ligase buffer (Promega)
• 1 μL of BsmBI
• 1 μL of T4 DNA ligase
• x μL water up to 20 μL total.

• Transform 2 μL assembly reaction and plate on LB + Cam

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly reaction

Total volume will be 20 μL; You will need 10 fmol of entry vector and 20 fmol of your DNA insert(s).

• 10 fmol pYTK-001 plasmid = 17.7ng [try to keep volume to 1-2μL]
• 20 fmol of insert DNA = 650 * insert length * 20x10^-6 = X ng [try to keep volume to less than 10 μL]
• 2 μL of 10× T4 DNA ligase buffer (Promega)
• 1 μL of BsmBI
• 1 μL of T4 DNA ligase
• x μL water up to 20 μL total.

• Transform 2 μL assembly reaction and plate on LB + Cam

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly reaction

Total volume will be 20 μL; You will need 10 fmol of entry vector and 20 fmol of your DNA insert(s).

• 2 μL of 10× T4 DNA ligase buffer (Promega)
• 1 μL of BsmBI
• 1 μL of T4 DNA ligase
• x μL water up to 20 μL total.

• Transform 2 μL assembly reaction and plate on LB + Cam

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly reaction

Total volume will be 20 μL; You will need 10 fmol of entry vector and 20 fmol of your DNA insert(s).

• 17.7ng pYTK-001 plasmid [try to keep volume to 1-2μL]
• 20 fmol of insert DNA = 650 * insert length * 20x10^-6 ng [try to keep volume to less than 10 μL]
• 2 μL of 10× T4 DNA ligase buffer (Promega)
• 1 μL of BsmBI
• 1 μL of T4 DNA ligase
• x μL water up to 20 μL total.

• Transform 2 μL assembly reaction and plate on LB + Cam

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly reaction

Total volume will be 20 μL; You will need 10 fmol of entry vector and 20 fmol of your DNA insert(s).

• 17.7ng pYTK-001 plasmid [try to keep volume to 1-2μL]
• 20 fmol of insert DNA = 650 * insert length * 20x10^-6 ng [try to keep volume to less than 10 μL]
• 2 μL of 10× T4 DNA ligase buffer (Promega)
• 1 μL of BsmBI
• 1 μL of T4 DNA ligase
• x μL water up to 20 μL total.

• Transform 2 μL assembly reaction and plate on LB + Cam

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly reaction

Total volume will be 20 μL; You will need 10 fmol of entry vector and 20 fmol of your DNA insert(s).

• 17.7ng pYTK-001 plasmid [try to keep volume to 1-2μL]
• 20 fmol of insert DNA = 650 * insert length * 20x10^-6 ng [try to keep volume to less than 10 μL]

• 1 μL of BsmBI
• 1 μL of T4 DNA ligase
• x μL water up to 20 μL total.

• Transform 2 μL assembly reaction and plate on LB + Cam

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly reaction

Total volume will be 20 μL; You will need 10 fmol of entry vector and 20 fmol of your DNA insert(s).

• 17.7ng pYTK-001 plasmid [try to keep volume to 1-2μL]
• 20 fmol of insert DNA = 650 * insert length * 20x10^-6 ng [try to keep volume to less than 10 μL]
• 2 μL of 10× T4 DNA ligase buffer
• 1 μL of BsmBI
• 1 μL of T4 DNA ligase
• x μL water up to 20 μL total.

Mix samples well by pipetting, then run the reaction on the thermocycler under the following conditions:

• Transform 2 μL assembly reaction and plate on LB + Cam

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly reaction

Total volume will be 20 μL; You will need 10 fmol of entry vector and 20 fmol of your DNA insert(s).

• 17.7ng pYTK-001 plasmid [try to keep volume to 1-2μL]
• 20 fmol of insert DNA = 650 * insert length * 20x10^-6 ng [try to keep volume to less than 10 μL]
• 2 μL of 10× T4 DNA ligase buffer
• 1 μL of BsmBI
• 1 μL of T4 DNA ligase
• x μL water up to 20 μL total.

Mix samples well by pipetting, then run the reaction on the thermocycler under the following conditions:

• Transform 2 μL assembly reaction and plate on LB + Cam

Part Plasmid Assembly

Once you have designed your part and either amplified with PCR or ordered the desired gBlock (as described here) you can proceed to the assembly step of the part plasmid itself. The example reaction below shows pYTK001 used as the entry vector for the reaction; however, this can be substituted for any other entry vector with requisite BsmBI cut sites. Once built, part plasmids can be assembled into transcriptional units.

Assembly reaction

Total volume will be 20 μL; You will need 10 fmol of entry vector and 20 fmol of your DNA insert(s).

• 17.7ng pYTK-001 plasmid [try to keep volume to 1-2μL]
• 20 fmol of insert DNA = 650 * insert length * 20x10^-6 ng [try to keep volume to less than 10 μL]
• 2 μL of 10× T4 DNA ligase buffer
• 1 μL of BsmBI
• 1 μL of T4 DNA ligase
• x μL water up to 20 μL total.

Mix samples well by pipetting, then run the reaction on the thermocycler under the following conditions:

• Transform 2 μL assembly reaction and plate on LB + Cam