Barrick Lab :: Computational Protocols
Command line
Unix Commands Quick Reference
Collection of useful Unix commands.
SSH Public Key Authentication
How to set up login without typing password between Linux machines.
Rename files via command line
How to use sed to rename multiple files in a single directory.
Leave a command running on a remote machine after logging out
How to start a command in a ssh session, and leave it running after logging out of the current window.
Mass File Extraction
Simple script for 'un-tar'ing and 'un-zip'ing all .tar.gz files in a single directory
Next generation sequencing data analysis
GSAF Sequence Retrieval and Backup
Instructions for downloading and backing up data sent by UT GSAF.
Flexbar Commands for Trimming Adapter Sequences
Command line tools for trimming adapter sequence from NGS reads.
Running
breseq
on TACC
Analyzing RNA-Seq data
Analyzing RNA-Seq data for differential expression.
Data Management
Publicly Archiving Data
Uploading data and obtaining an accession number from GenBank, SRA, and Dryad databases.
BEACON
How to set up the BEACON teleconference in GDC7.808
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Contributors to this topic
JeffreyBarrick, DanielDeatherage, SimonDAlton, JuliePerreau, LucyLeblanc, StellaWang, MattMcGuffie
Topic revision: r6 - 2015-06-12 - 19:43:17 - Main.JeffreyBarrick
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