Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	REL606	3,943,011	0	A→C	25.7%	10.2	35	T109P (ACC→CCC)	yifK	predicted transporter
Reads supporting (aligned to +/- strand):  new base (0/9):  ref base (22/4):  total (22/13)

GGTTTATGTGGATGGCTGTGGGGATCTCAGAAATCA.CCGCCATTGGCGTTTATGTCCAGTTCTGGTTCCCG  >  REL606/3942976‑3943046                                    |                                     ggTTTATGTGGATGGCTGTGGGGGTCTCTGAAATCa                                      >  1:7410700/1‑36 (MQ=25)  gTTTATGTGGATGGCTGTGGGGATCTCAGAAATCA.c                                    <  1:4626109/36‑1 (MQ=255)  gTTTATGTGGATGGCTGTGCGGATCTCTGAAATCA.c                                    >  1:1656757/1‑36 (MQ=25)   tttATGTGGATGGCTGTGGGGATCTCAGAAATTA.cc                                   >  1:2638577/1‑36 (MQ=255)   tttATGTGGATGGCTGTGGGGATCTCAGAAATCA.cc                                   >  1:955977/1‑36 (MQ=255)    ttATGTGGATGGCTGTGGGGATCTCAGAAATCA.CCg                                  >  1:1860192/1‑36 (MQ=255)    ttATGTGGATGGCTGTGGGGATCTCAGAAATCA.CCg                                  <  1:3334105/36‑1 (MQ=255)      aTGTGGATGGCTGTGGGGGTCTCAGAAATCA.CTGcc                                >  1:2385531/1‑36 (MQ=25)       tgtgGGTGGCTGTGGGGATCTCAGAAGTCA.CCGCCa                               <  1:6765189/36‑1 (MQ=25)        gtgGATGGCTGTGGGGATCTTAGAAATCA.CCGCCAt                              >  1:3201253/1‑36 (MQ=255)        gtgGATGGCTGTGGGGATCTCAGAAATCA.CCGCCAt                              >  1:3759801/1‑36 (MQ=255)        gtgGATGGCTGTGGGGACCTCAGAAACCC.CCGCCAt                              <  1:7462391/36‑1 (MQ=255)         tgGATGGCTGTGGGGATCTCAGAAATTA.CCGCCAtt                             >  1:1836809/1‑36 (MQ=255)         tgGATGGCTGTGGGGATCTCAGAAATCA.CCGCCAtt                             >  1:5217065/1‑36 (MQ=255)         tgGATGGCTGTGGGGATCTCAGAAATCA.CCGCCAtt                             >  1:7478075/1‑36 (MQ=255)          ggATGGCTGTGGGGATCTCAGAAATCA.CCGCCCTTg                            >  1:5716696/1‑36 (MQ=255)             tGGCTGTGGGGATCTCAGAAATCA.CCCCCATCGGCg                         >  1:2023015/1‑36 (MQ=25)              ggCTGTGGGGATCTCAGAAATCA.CCGCCATCGGCGt                        >  1:6301722/1‑36 (MQ=255)               ccTGTGGGAACCACAGAAACCC.CCGCCATTGGCGtt                       <  1:5621830/35‑1 (MQ=12)                gggtgGGGATCTAAGAAACCC.CCGCCATTGGCGttt                      <  1:1417619/34‑1 (MQ=21)                cTGGGGGTATCTCAAAAACCA.CCGCCATTGGCGttt                      <  1:7294560/36‑1 (MQ=17)                 tgtgGGGATCTCAGNNATCA.CCGCCATTGGCGTTTa                     >  1:1975819/1‑36 (MQ=37)                 gggggggATCTAAGAAATCC.CCGCCATTGGCGTTTa                     <  1:5731456/33‑1 (MQ=21)                     ggaaTCTAAAAAACCC.CCGCCATTGGCGTTTATGTc                 <  1:722584/33‑1 (MQ=12)                       gATCTCAGAAATCA.CCGCCATTGGCGTTTTTGTcga               >  1:1988483/1‑34 (MQ=25)                        aTCTCAGAAATCA.CCGCCATTGGCGTTTATGTTCAg              >  1:6089408/1‑36 (MQ=255)                        aTCTCAGAAATCA.CCGCCATTGGCGTTTATGTCCAg              >  1:2207072/1‑36 (MQ=255)                         tctcAGAAATCA.CCGCCATTGGCGTTAATGTCCAGt             >  1:2082440/1‑36 (MQ=255)                          tctaGAAATCCCCCGCCATTGGCGTTTATGTCCAGt             <  1:4754751/33‑1 (MQ=18)                           tcAGAAATCA.CCGCCATTGGCGTTTATGTCCAgctt           >  1:764414/1‑33 (MQ=255)                            cAGAAATCA.CCGCCATTGGCGTTTATGTCCAGTTCt          >  1:6281328/1‑36 (MQ=255)                            cAGAAATCA.CCGCCATTGGCGTTTATGTCCAGTTCt          >  1:5972831/1‑36 (MQ=255)                            cAGAAACCC.CCGCCATTGGCGTTTATGTCCAGTTCt          <  1:2659809/36‑1 (MQ=25)                             aGAAACCC.CCGCCATTGGCGTTTATGTCCAGTTCTg         <  1:7224564/36‑1 (MQ=25)                              aaaaTCC.CCGCCATTGGCGTTTATGTCCAGTTCTgg        <  1:5766713/35‑1 (MQ=255)                                   cA.CCGCCATTGGCGTTTATGTCCAGTTCTGGTTccc   >  1:485373/1‑36 (MQ=255)                                    a.CCGCCCTTGGCGTTTATGTCCAGTTCTGGTTCCCg  >  1:2025443/1‑36 (MQ=255)                                    a.CCGCCATTGGCGTTTATGTCCAGTTCTGGTTCCCg  >  1:4084189/1‑36 (MQ=255)                                    |                                     GGTTTATGTGGATGGCTGTGGGGATCTCAGAAATCA.CCGCCATTGGCGTTTATGTCCAGTTCTGGTTCCCG  >  REL606/3942976‑3943046 Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 11 ≤  ATCG  < 26 ≤  ATCG  < 32 ≤  ATCG