Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,357,0160G→T33.3% 15.833intergenic (‑349/‑125)rrsD/yrdA16S ribosomal RNA/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (1/10):  ref base (9/13):  total (10/23)

TGCACAAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACA  >  REL606/3356982‑3357051
                                     |                                   
tGCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgt                                    <  1:313966/36‑1 (MQ=255)
 gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                                   <  1:1120976/36‑1 (MQ=255)
 gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                                   >  1:4219664/1‑36 (MQ=255)
 gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                                   <  1:1817832/36‑1 (MQ=255)
 gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                                   >  1:1955608/1‑36 (MQ=255)
  cacaAGTATTTTTTTGA.TCTTT.TTTTC.TGTttgttg                                  <  1:5600427/36‑1 (MQ=255)
    cgaGTATTTTTTTGA.TCTTT.TTTTC.TGTTTgttgtt                                <  1:2529049/34‑1 (MQ=255)
    caAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTgttgtt                                >  1:3889518/1‑36 (MQ=255)
    caAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTgttgtt                                >  1:6703481/1‑36 (MQ=255)
     aaGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGttt                               >  1:5644610/1‑36 (MQ=255)
     aaGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGttt                               >  1:7117565/1‑36 (MQ=255)
       ttttttttttGT.TTTCT.TTTGT.TGTTTTTTTtcttt                             <  1:6569860/33‑1 (MQ=0)
       ttttttttttGT.TATTT.TTTTT.TTTCTGTTTttttt                             <  1:6640479/33‑1 (MQ=2)
       ttttttttgtGT.TTTGT.TTTTT.TGTTTGTTGttttt                             <  1:6580415/33‑1 (MQ=9)
       tgttttttttTT.TCTGT.TTTT..TTTTCTTTGtttttt                            <  1:6808247/33‑1 (MQ=2)
       tattttttttGG.TTTTT.TTTTC.TGTTTTTTCctttt                             >  1:6183110/4‑36 (MQ=0)
       gTATTTTTTTCA.TCTTT.TTTTC.TGTTTGTTGttttt                             >  1:5769633/1‑36 (MQ=255)
        tATTATTTTG..TTTTT.TTTTT.TTTTTGTTGttttttt                           <  1:6530525/36‑2 (MQ=2)
        gtttttcttGA.TCTTT.TTTTT.TTTTTTTTTtttttt                            <  1:3730625/34‑1 (MQ=16)
        cggtttttcTA.TTTTT.TTTGT.TTTTTGTTGtttttt                            <  1:7356480/33‑1 (MQ=2)
         tgttttttGT.GTTTT.TGTTT.TTTTTTTTCTGTTTTc                           <  1:7218782/34‑1 (MQ=2)
         tgttttgtGG.TTTTT.TTTTT.TTTTTTTTCtgttttg                           <  1:6934186/34‑2 (MQ=2)
         ctttatttGT.TTTTT.TTTGT.TGTTTTTTTttttttt                           <  1:7282917/35‑2 (MQ=0)
         aTTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTc                           <  1:5228470/36‑1 (MQ=255)
          tttttttTT.TTTTG.TTTTCTTTTTTGTTGttttttt                           <  1:6778929/36‑2 (MQ=2)
          tttttttTT.TCTTT.TGTTG.TTTTTTTTTttattttt                          <  1:6894655/36‑3 (MQ=9)
          tttttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCa                          <  1:4721504/36‑1 (MQ=255)
          gtttgttGC.TTTTG.TTTTT.TCTTTGTTGtttttttt                          <  1:7162548/35‑3 (MQ=0)
           ttttttTT.TATTT.TTTTC.TGTTTTTATttttttttt                         <  1:6778955/36‑4 (MQ=2)
           ttttttGA.TCTTTCTAGTC.TCTTTTTTTtttttttt                          <  1:7172177/36‑3 (MQ=0)
           ctttttGAGTTTTT.TTTTT.TTTTTGTTGtttttttt                          <  1:6628095/35‑3 (MQ=2)
            tttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCatc                        >  1:6709941/1‑34 (MQ=255)
            tttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCAcc                        >  1:4581517/1‑36 (MQ=255)
            tttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCAcc                        >  1:6700900/1‑36 (MQ=255)
                tGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCttt                    <  1:5206217/36‑1 (MQ=255)
                tGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCttt                    >  1:2114620/1‑36 (MQ=255)
                      ttt.tttgT.TGTTTTTTCTTTTGTTTCCTTTTTttct               <  1:7338538/36‑1 (MQ=2)
                       tt.ttttC.TGTTTGTTGTTTTTTCACCCTTTTtgttg              >  1:294242/1‑36 (MQ=255)
                       tt.ttttC.TGTTTGTTGTTTTTTCACCCTTTTtgctg              <  1:6873788/36‑1 (MQ=255)
                            ttC.TGTTTGTTGTTTTTTCACCCTTTTTGCTGCAAt          >  1:4111708/1‑36 (MQ=255)
                            ttC.TGTTTGTTGTTTTTTCACCCTTTTTGCTGCAAt          <  1:2541083/36‑1 (MQ=255)
                             tC.TGTTTGTTGTTTTTTCGCCCTTTTTGCTGCAATc         <  1:879231/36‑1 (MQ=255)
                                 gtttgttGTTTTTTCACCCTTTTTGCTGCAATCGca      >  1:3426704/1‑36 (MQ=255)
                                 gtttgttGTTTTTTCACCCTTTTTGCTGCAATCGca      <  1:1409564/36‑1 (MQ=255)
                                 gtttgttGTTTTTTCACCCTATTTTCTGCAATCGca      >  1:536387/1‑36 (MQ=25)
                                  tttgttGTTTTTTCACCCTTTTTGCTGCAATCGcac     >  1:6159712/1‑36 (MQ=255)
                                  tttgttGTTTTTTCACCCTTTTTGCTGCAATCGcac     <  1:1166855/36‑1 (MQ=255)
                                  tttgttGTTTTTTCACCCTTTTTGCTGCAATCGcac     >  1:3613227/1‑36 (MQ=255)
                                  tttgttGTTTTTTCACCCTTTTTGCTGCAATCGcac     <  1:2328824/36‑1 (MQ=255)
                                  tttgttGTTTTTTCACCCTTTTTGCTGCAATCGcac     <  1:2020032/36‑1 (MQ=255)
                                  tgtgttgtTTTTTCACCCTTTTTGCTGCAATCGcac     <  1:1727893/34‑1 (MQ=255)
                                   ttgttgTTTTTTCACCCTTTTTGCTGCAATCGcaca    >  1:4722944/1‑36 (MQ=255)
                                     gttgttTTTTCACCCTTTTTGCTGCAATCGcacaca  <  1:3208967/36‑1 (MQ=255)
                                     gttgttTTTTCACCCTTTTTGCTGCAATCGcacaca  <  1:2030589/36‑1 (MQ=255)
                                     gttgttTTTTCACCCTTTTTGCTGCAATCGcacaca  <  1:975752/36‑1 (MQ=255)
                                     |                                   
TGCACAAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCACACA  >  REL606/3356982‑3357051

Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 13 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG