Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,357,0120G→T28.6% 10.237intergenic (‑345/‑129)rrsD/yrdA16S ribosomal RNA/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (0/10):  ref base (12/13):  total (12/25)

TTTTTTGCACAAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCA  >  REL606/3356977‑3357047
                                      |                                   
ttttttGCACAAGTATTTTTTTGA.TCTTT.TTTTC.tg                                     <  1:6446157/36‑1 (MQ=255)
 tttttGCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgt                                    >  1:3508622/1‑36 (MQ=255)
  ttttGCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtt                                   >  1:7406358/1‑36 (MQ=255)
     tGCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgt                                <  1:313966/36‑1 (MQ=255)
      gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                               >  1:4219664/1‑36 (MQ=255)
      gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                               <  1:1120976/36‑1 (MQ=255)
      gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                               >  1:1955608/1‑36 (MQ=255)
      gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                               <  1:1817832/36‑1 (MQ=255)
       cacaAGTATTTTTTTGA.TCTTT.TTTTC.TGTttgttg                              <  1:5600427/36‑1 (MQ=255)
         cgaGTATTTTTTTGA.TCTTT.TTTTC.TGTTTgttgtt                            <  1:2529049/34‑1 (MQ=255)
         caAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTgttgtt                            >  1:6703481/1‑36 (MQ=255)
         caAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTgttgtt                            >  1:3889518/1‑36 (MQ=255)
          aaGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGttt                           >  1:7117565/1‑36 (MQ=255)
          aaGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGttt                           >  1:5644610/1‑36 (MQ=255)
            ttttttttttGT.TTTCT.TTTGT.TGTTTTTTTtcttt                         <  1:6569860/33‑1 (MQ=0)
            ttttttttttGT.TATTT.TTTTT.TTTCTGTTTttttt                         <  1:6640479/33‑1 (MQ=2)
            ttttttttgtGT.TTTGT.TTTTT.TGTTTGTTGttttt                         <  1:6580415/33‑1 (MQ=9)
            tgttttttttTT.TCTGT.TTTT..TTTTCTTTGtttttt                        <  1:6808247/33‑1 (MQ=2)
            tattttttttGG.TTTTT.TTTTC.TGTTTTTTCctttt                         >  1:6183110/4‑36 (MQ=0)
            gTATTTTTTTCA.TCTTT.TTTTC.TGTTTGTTGttttt                         >  1:5769633/1‑36 (MQ=255)
             tATTATTTTG..TTTTT.TTTTT.TTTTTGTTGttttttt                       <  1:6530525/36‑2 (MQ=2)
             gtttttcttGA.TCTTT.TTTTT.TTTTTTTTTtttttt                        <  1:3730625/34‑1 (MQ=16)
             cggtttttcTA.TTTTT.TTTGT.TTTTTGTTGtttttt                        <  1:7356480/33‑1 (MQ=2)
              tgttttttGT.GTTTT.TGTTT.TTTTTTTTCTGTTTTc                       <  1:7218782/34‑1 (MQ=2)
              tgttttgtGG.TTTTT.TTTTT.TTTTTTTTCtgttttg                       <  1:6934186/34‑2 (MQ=2)
              ctttatttGT.TTTTT.TTTGT.TGTTTTTTTttttttt                       <  1:7282917/35‑2 (MQ=0)
              aTTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTc                       <  1:5228470/36‑1 (MQ=255)
               tttttttTT.TTTTG.TTTTCTTTTTTGTTGttttttt                       <  1:6778929/36‑2 (MQ=2)
               tttttttTT.TCTTT.TGTTG.TTTTTTTTTttattttt                      <  1:6894655/36‑3 (MQ=9)
               tttttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCa                      <  1:4721504/36‑1 (MQ=255)
               gtttgttGC.TTTTG.TTTTT.TCTTTGTTGtttttttt                      <  1:7162548/35‑3 (MQ=0)
                ttttttTT.TATTT.TTTTC.TGTTTTTATttttttttt                     <  1:6778955/36‑4 (MQ=2)
                ttttttGA.TCTTTCTAGTC.TCTTTTTTTtttttttt                      <  1:7172177/36‑3 (MQ=0)
                ctttttGAGTTTTT.TTTTT.TTTTTGTTGtttttttt                      <  1:6628095/35‑3 (MQ=2)
                 tttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCatc                    >  1:6709941/1‑34 (MQ=255)
                 tttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCAcc                    >  1:6700900/1‑36 (MQ=255)
                 tttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCAcc                    >  1:4581517/1‑36 (MQ=255)
                     tGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCttt                >  1:2114620/1‑36 (MQ=255)
                     tGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCttt                <  1:5206217/36‑1 (MQ=255)
                           ttt.tttgT.TGTTTTTTCTTTTGTTTCCTTTTTttct           <  1:7338538/36‑1 (MQ=2)
                            tt.ttttC.TGTTTGTTGTTTTTTCACCCTTTTtgttg          >  1:294242/1‑36 (MQ=255)
                            tt.ttttC.TGTTTGTTGTTTTTTCACCCTTTTtgctg          <  1:6873788/36‑1 (MQ=255)
                                 ttC.TGTTTGTTGTTTTTTCACCCTTTTTGCTGCAAt      >  1:4111708/1‑36 (MQ=255)
                                 ttC.TGTTTGTTGTTTTTTCACCCTTTTTGCTGCAAt      <  1:2541083/36‑1 (MQ=255)
                                  tC.TGTTTGTTGTTTTTTCGCCCTTTTTGCTGCAATc     <  1:879231/36‑1 (MQ=255)
                                      gtttgttGTTTTTTCACCCTTTTTGCTGCAATCGca  >  1:3426704/1‑36 (MQ=255)
                                      gtttgttGTTTTTTCACCCTTTTTGCTGCAATCGca  <  1:1409564/36‑1 (MQ=255)
                                      gtttgttGTTTTTTCACCCTATTTTCTGCAATCGca  >  1:536387/1‑36 (MQ=25)
                                      |                                   
TTTTTTGCACAAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCTTTTTGCTGCAATCGCA  >  REL606/3356977‑3357047

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 12 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG