Read alignment evidence...
  seq id position change freq score reads annotation genes product
*REL6063,357,0020C→T24.4% 16.647intergenic (‑335/‑139)rrsD/yrdA16S ribosomal RNA/hypothetical protein
Reads supporting (aligned to +/- strand):  new base (1/10):  ref base (17/17):  total (18/29)

GGGATCCCAATTTTTTGCACAAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCTTT  >  REL606/3356967‑3357033
                                    |                                 
gggATCCCAATTTTTTGCACAAGTATTTTTTTGA.Tc                                   <  1:2378154/36‑1 (MQ=255)
 ggATCCCAATTTTTTGCACAAGTATTTTTTTGA.TCt                                  >  1:2769792/1‑36 (MQ=255)
   aTCCCAATTTTTTGCACAAGGATTTTTTTGA.TCttt                                >  1:3800737/1‑36 (MQ=255)
      ccAATTTTTTGCACAAGTATTTTTTTGA.TCttt.ttt                            <  1:4722465/36‑1 (MQ=255)
      ccAATTTTTTGCAAAAGTATTTTTTTGA.TCttt.ttt                            <  1:3412716/36‑1 (MQ=255)
       cAATTTTTTGCACAAGTATTTTTTTGA.TCttt.tttt                           >  1:3912399/1‑36 (MQ=255)
        aaTTTTTTGCACAAGTATTTTTTTGA.TCTTT.TTTTc                          <  1:6539204/36‑1 (MQ=255)
         aTTTTTTGCACAAGTATTTTTTTGA.TCTTT.TTTTC.t                        >  1:7042572/1‑36 (MQ=255)
         aTTTTTTGCACAAGTATGGTTTTGA.TCTTT.TTTTC.t                        <  1:3828889/36‑1 (MQ=25)
          ttttttGCACAAGTATTTTTTTGA.TCTTT.TTTTC.tg                       <  1:6446157/36‑1 (MQ=255)
           tttttGCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgt                      >  1:3508622/1‑36 (MQ=255)
            ttttGCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtt                     >  1:7406358/1‑36 (MQ=255)
               tGCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgt                  <  1:313966/36‑1 (MQ=255)
                gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                 >  1:4219664/1‑36 (MQ=255)
                gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                 <  1:1120976/36‑1 (MQ=255)
                gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                 <  1:1817832/36‑1 (MQ=255)
                gCACAAGTATTTTTTTGA.TCTTT.TTTTC.tgtttgtt                 >  1:1955608/1‑36 (MQ=255)
                 cacaAGTATTTTTTTGA.TCTTT.TTTTC.TGTttgttg                <  1:5600427/36‑1 (MQ=255)
                   cgaGTATTTTTTTGA.TCTTT.TTTTC.TGTTTgttgtt              <  1:2529049/34‑1 (MQ=255)
                   caAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTgttgtt              >  1:6703481/1‑36 (MQ=255)
                   caAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTgttgtt              >  1:3889518/1‑36 (MQ=255)
                    aaGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGttt             >  1:5644610/1‑36 (MQ=255)
                    aaGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGttt             >  1:7117565/1‑36 (MQ=255)
                      ttttttttttGT.TTTCT.TTTGT.TGTTTTTTTtcttt           <  1:6569860/33‑1 (MQ=0)
                      ttttttttttGT.TATTT.TTTTT.TTTCTGTTTttttt           <  1:6640479/33‑1 (MQ=2)
                      ttttttttgtGT.TTTGT.TTTTT.TGTTTGTTGttttt           <  1:6580415/33‑1 (MQ=9)
                      tgttttttttTT.TCTGT.TTTT..TTTTCTTTGtttttt          <  1:6808247/33‑1 (MQ=2)
                      tattttttttGG.TTTTT.TTTTC.TGTTTTTTCctttt           >  1:6183110/4‑36 (MQ=0)
                      gTATTTTTTTCA.TCTTT.TTTTC.TGTTTGTTGttttt           >  1:5769633/1‑36 (MQ=255)
                       tATTATTTTG..TTTTT.TTTTT.TTTTTGTTGttttttt         <  1:6530525/36‑2 (MQ=2)
                       gtttttcttGA.TCTTT.TTTTT.TTTTTTTTTtttttt          <  1:3730625/34‑1 (MQ=16)
                       cggtttttcTA.TTTTT.TTTGT.TTTTTGTTGtttttt          <  1:7356480/33‑1 (MQ=2)
                        tgttttttGT.GTTTT.TGTTT.TTTTTTTTCTGTTTTc         <  1:7218782/34‑1 (MQ=2)
                        tgttttgtGG.TTTTT.TTTTT.TTTTTTTTCtgttttg         <  1:6934186/34‑2 (MQ=2)
                        ctttatttGT.TTTTT.TTTGT.TGTTTTTTTttttttt         <  1:7282917/35‑2 (MQ=0)
                        aTTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTc         <  1:5228470/36‑1 (MQ=255)
                         tttttttTT.TTTTG.TTTTCTTTTTTGTTGttttttt         <  1:6778929/36‑2 (MQ=2)
                         tttttttTT.TCTTT.TGTTG.TTTTTTTTTttattttt        <  1:6894655/36‑3 (MQ=9)
                         tttttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCa        <  1:4721504/36‑1 (MQ=255)
                         gtttgttGC.TTTTG.TTTTT.TCTTTGTTGtttttttt        <  1:7162548/35‑3 (MQ=0)
                          ttttttTT.TATTT.TTTTC.TGTTTTTATttttttttt       <  1:6778955/36‑4 (MQ=2)
                          ttttttGA.TCTTTCTAGTC.TCTTTTTTTtttttttt        <  1:7172177/36‑3 (MQ=0)
                          ctttttGAGTTTTT.TTTTT.TTTTTGTTGtttttttt        <  1:6628095/35‑3 (MQ=2)
                           tttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCatc      >  1:6709941/1‑34 (MQ=255)
                           tttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCAcc      >  1:4581517/1‑36 (MQ=255)
                           tttttGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCAcc      >  1:6700900/1‑36 (MQ=255)
                               tGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCttt  >  1:2114620/1‑36 (MQ=255)
                               tGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCttt  <  1:5206217/36‑1 (MQ=255)
                                    |                                 
GGGATCCCAATTTTTTGCACAAGTATTTTTTTGA.TCTTT.TTTTC.TGTTTGTTGTTTTTTCACCCTTT  >  REL606/3356967‑3357033

Base quality scores:  ATCG  < 3 ≤  ATCG  < 6 ≤  ATCG  < 12 ≤  ATCG  < 25 ≤  ATCG  < 32 ≤  ATCG