Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	REL606	1,602,101	0	C→T	100.0%	2.1	3	intergenic (+124/+104)	pinQ/ECB_01505	predicted site‑specific recombinase/conserved hypothetical protein
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (0/1):  total (2/1)

TTACCCTACGGCAGTGCTGGCCATTCAATATCCTGTGCAGTTGACGTATCAACACGGTTCAGCAAC  >  REL606/1602070‑1602135                                |                                   ttACCCTACGGCAGTGCTGGCCATTCTATATTCttt                                >  1:5275201/1‑34 (MQ=1)     ccTACGGCAGTGCTGGCCCTTTAATATTCTTTTCAg                            >  1:202760/1‑36 (MQ=0)                               tCCTGTGCAGTTGACGTATCAACACGGTTCAGCAac  <  1:3105513/36‑1 (MQ=32)                                |                                   TTACCCTACGGCAGTGCTGGCCATTCAATATCCTGTGCAGTTGACGTATCAACACGGTTCAGCAAC  >  REL606/1602070‑1602135 Base quality scores:  ATCG  < 3 ≤  ATCG  < 5 ≤  ATCG  < 8 ≤  ATCG  < 22 ≤  ATCG  < 32 ≤  ATCG