BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	annotation	gene	product
*	?	REL606	= 23727	NA (NA)	36 (0.720)	21/64	1.1	noncoding (437/768 nt)	IS1	repeat region
*	?	REL606	= 666130	NA (NA)	36 (0.720)	21/64	1.1	noncoding (1443/1443 nt)	IS150	repeat region

Only 100 of 106 total aligned reads displayed.


GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG.............................  >  REL606/23692‑23727


...................................ATGTACTGACCCCAAAAAGTTGGACAGTTAAA  <  REL606/666130‑666100


gaCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:1130449/34‑1 (MQ=255)


GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:276036/36‑1 (MQ=255)


GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:4380123/36‑1 (MQ=255)


GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:1405952/36‑1 (MQ=255)


GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:6787106/36‑1 (MQ=255)


GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:6847891/36‑1 (MQ=255)


GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:1010943/36‑1 (MQ=255)


GGCTAAATCGCGCCAGCGCTGGCTGGTTTACGCGTA                                 >  1:3724074/1‑36 (MQ=255)


GGCAAAATCGCGCCAGCGCTGGCTGTTTTACGCGTA                                 <  1:4198610/36‑1 (MQ=255)


 tCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:2848801/35‑1 (MQ=255)


 gtTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:817986/34‑1 (MQ=255)


 aCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:3384133/35‑1 (MQ=255)


 GCTGAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:5778629/36‑1 (MQ=255)


 GCTACATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:5035640/36‑1 (MQ=255)


 GCTAAATCGCGCGAGCGCTGGCTGTTTTACGCGTAT                                <  1:1222315/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:2975071/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:3308930/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:3429799/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:3760178/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:396906/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:4109080/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:897801/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:4941630/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:5355622/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:5985358/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:6365469/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:6419524/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                >  1:7466142/1‑36 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:7101008/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:696479/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:7080641/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:1686566/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:2742047/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:1106074/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:2451154/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                >  1:1429681/1‑36 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                >  1:2155780/1‑36 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:2540277/36‑1 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGGTTTACGCGTAT                                >  1:3042124/1‑36 (MQ=255)


 GCTAAATCGCGCCAGCGCTGGCTGGTTTACGCGTAT                                >  1:6171923/1‑36 (MQ=255)


 GCTAAACCGCGCCAGCGCTGGCTGTTTTACGCGTAT                                <  1:239609/36‑1 (MQ=255)


  caAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:190962/34‑1 (MQ=255)


  aTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:4349097/35‑1 (MQ=255)


  CTAGATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:4361320/36‑1 (MQ=255)


  CTAGATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:3533212/36‑1 (MQ=255)


  CTAAATCGCGCCCGCGCTGGCTGTTTTACGCGTATG                               >  1:4124220/1‑36 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTAcg                               <  1:5853058/36‑3 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:4398891/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:2319513/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:5096630/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:6251453/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:5589601/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:1756691/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:413435/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:1093472/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:3015818/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:3159918/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:1127287/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:1136837/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:701037/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:2544042/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:4105958/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:1238196/36‑1 (MQ=255)


  CTAAATCGCGCCAGCGCTGGCTGTTTTACGCCTATG                               >  1:758541/1‑36 (MQ=255)


  CTAAATCGCGCCAGCGCGGGCTGTTTTACGCGTATG                               <  1:3698273/36‑1 (MQ=255)


  CTAAATCGCGACAGCGCTGGCTGTTTTACGCGTATG                               <  1:3293309/36‑1 (MQ=255)


  CTAAATCACGCCAGCGCTGGCTGTTTTACGCGTATG                               <  1:851800/36‑1 (MQ=0)


   TAAATCGCGCCAGCGCTGGCTGTTTTTCGCGTATGT                              >  1:6075927/1‑36 (MQ=255)


   TAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGT                              <  1:2465990/36‑1 (MQ=255)


    gAATCGCGCCAGCGCTGGCTGTTTTACGCGTATGgc                             <  1:6823924/35‑3 (MQ=255)


    AAATCGCGCCAGCGCTGGCTGTTTTACGCGTATtac                             >  1:5463702/1‑33 (MQ=255)


      ATCGCGCCAGCGCTGGCTGTTTTACGCGTATGTACT                           <  1:2293644/36‑1 (MQ=255)


       TCGCGCCAGCGCTGGCTGTTTTACGCGTATGTACTG                          <  1:1197180/36‑1 (MQ=255)


           cCCAGCGCTGGCTGTTTTACGCGTATGTACTGACCC                      <  1:2834758/35‑1 (MQ=17)


            CCAGCGGTGGCTGTTTTACGCGTATGTACTGACCCC                     <  1:6706262/36‑1 (MQ=12)


                CGCTGGCTGTTTTACGCGTATGTACTTACCCCAAAA                 >  1:6930671/1‑36 (MQ=0)


                    GGCTGTTTTACGCGTATGTACTGACCCCAAAAAGTT             <  1:2503506/36‑1 (MQ=1)


                    GGCTGTTTTACGCGTATGTACTGACCCCAAAAAGTT             <  1:5800445/36‑1 (MQ=1)


                     gcaGTTTTACGCGTATGTACTGACCCCAAAAAGTTG            <  1:7355760/33‑1 (MQ=0)


                     GCTGTTTTACGCGTATGTACTGACCCCAAAAAGTTG            <  1:1106729/36‑1 (MQ=1)


                     GCTGTTTTACGCGTATGTACTGACCCCAAAAAGTTG            <  1:620173/36‑1 (MQ=1)


                       TGTTTTACGCGTATGTACTGACCCCAAAAAGTTGGA          <  1:1641709/36‑1 (MQ=1)


                       TGTTTTACGCGTATGTACTGACCCCAAAAAGTTGGA          <  1:5253733/36‑1 (MQ=1)


                       TGTTTTACGCGTATGTACTGACCCCAAAAAGTTGGA          >  1:6093121/1‑36 (MQ=1)


                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC         <  1:3170498/36‑1 (MQ=1)


                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC         >  1:7384601/1‑36 (MQ=1)


                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC         >  1:3180690/1‑36 (MQ=1)


                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC         >  1:3358827/1‑36 (MQ=1)


                        GTTTTACGCGTATGTACTGACCCCAAAAAGTTGGAC         >  1:3506862/1‑36 (MQ=1)


                          TTTACGCGTATGTACTGACCCCAAAAAGTTGGACAG       <  1:5483449/36‑1 (MQ=1)


                          TTTACGCGTATGTACTGACCCCAAAAAGTTGGACAG       >  1:6682853/1‑36 (MQ=1)


                           TTACGCGTATGTACTGACCCCAAAAAGTTGGACAct      >  1:785057/1‑34 (MQ=1)


                           TTACGCGTATGTACTGACCCCAAAAAGTTGGACAGT      >  1:6641398/1‑36 (MQ=1)


                           TTACGCGTATGTACTGACCCCAAAAAGTTGGACAGT      >  1:2697100/1‑36 (MQ=1)


                           TTACGCGTATGTACTGACCCCAAAAAGTTGGACAGT      >  1:2865714/1‑36 (MQ=1)


                            TACGCGTATGTACTGACCCCAAAAAGTTGGACAGTT     <  1:2686747/36‑1 (MQ=1)


                            TACGCGTATGTACTGACCCCAAAAAGTTGGACAGTT     <  1:1235836/36‑1 (MQ=1)


                              CGCGTATGTACTGACCCCAAAAAGTTGGACAGTTAA   <  1:5368554/36‑1 (MQ=1)


                               GCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAA  <  1:6886868/36‑1 (MQ=1)


                               GCGTATGTACTGACCCCAAAAAGTTGGACAGTTAAA  <  1:2427399/36‑1 (MQ=1)


GGCTAAATCGCGCCAGCGCTGGCTGTTTTACGCGTATG.............................  >  REL606/23692‑23727


...................................ATGTACTGACCCCAAAAAGTTGGACAGTTAAA  <  REL606/666130‑666100

Base quality scores:


ATCG

< 3 ≤


ATCG

< 9 ≤


ATCG

< 17 ≤


ATCG

< 29 ≤


ATCG

< 32 ≤


ATCG