| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | 66 | 13,351 | 0 | A | T | 63.1% | 36.3 / 153.8 | 147 | intergenic (–/–) | –/– | –/– |
| Reads supporting (aligned to +/- strand): ref base A (23/29); new base T (45/44); total (72/75) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 154 total aligned reads displayed.
GGCGTTAATCTGGCTGCTGACCAATCGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGTGTTTGTCAT > 66/13252‑13451 | ggCGTTAATCTGGCTGCTGACCAATCGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCgag < 2:376675/101‑1 (MQ=255) cGTTAATCTGGCTGCTGACCAATCGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGaa > 2:1410146/1‑101 (MQ=255) cGTTAATCTGGCTGCTGACCAATCGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGaa > 1:495512/1‑101 (MQ=255) gctgctGACCAATCGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATcc < 2:1008916/101‑1 (MQ=255) gctgACCAATCGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGc < 1:373244/101‑1 (MQ=255) ctgACCAATCGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGcc > 2:1652603/1‑101 (MQ=255) aattcctgcctgatgggaggcggcgcaattgcgccgcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCt > 2:1419381‑M2/68‑101 (MQ=255) aCCAATCGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTAc > 1:1177350/1‑101 (MQ=255) tgcctgatgggaggcggcgcaattgcgccgcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaaa > 1:207963‑M2/62‑101 (MQ=255) aTCGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACaaaa > 1:884332/1‑101 (MQ=255) cGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑Ca > 2:512183/1‑101 (MQ=255) tgatgggaggcggcgcaattgcgccgcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAaaa‑ctgt < 1:1258578‑M2/44‑4 (MQ=255) gTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGa > 2:967441/1‑101 (MQ=255) gTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGGGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGa > 1:1566447/1‑101 (MQ=255) atgggaggcggcgcaattgcgccgcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAcaaaa‑ctgtgc > 2:1487063‑M2/56‑96 (MQ=255) tgggaggcggcgcaattgcgccgcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTacaaaa‑ctgtgca > 2:211124‑M2/55‑95 (MQ=255) ttACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGaaa < 2:1095044/101‑1 (MQ=255) gaggcggcgcaattgcgccgcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGcctacaaaa‑ctgtgcaaat < 2:621611‑M2/50‑10 (MQ=255) gcgcTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTc < 2:495507/101‑1 (MQ=255) gcTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCaa > 2:132753/1‑101 (MQ=255) cTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAat > 2:1284397/1‑101 (MQ=255) ttGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAata < 1:59153/101‑1 (MQ=255) tttAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATAtt > 1:801482/1‑101 (MQ=255) attgcgccgcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTg < 1:1239307‑M2/61‑1 (MQ=255) aaTGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCa > 2:1147789/1‑101 (MQ=255) cgccgcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGCAg‑g > 2:1574868‑M2/37‑101 (MQ=255) aagaaAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑gag > 2:281838/1‑101 (MQ=255) cgcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGCag‑gaaa < 1:320273‑M2/68‑3 (MQ=255) cgcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGCag‑gaaa < 2:456530‑M2/68‑3 (MQ=255) gcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGcag‑gaaac < 2:928787‑M2/69‑4 (MQ=255) gcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGcag‑gaaac > 2:253517‑M2/33‑98 (MQ=255) gcctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGcag‑gaaac < 1:417423‑M2/69‑4 (MQ=255) cctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTgcag‑gaaaca < 2:363078‑M2/70‑5 (MQ=255) ctcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATtgcag‑gaaacac > 2:123908‑M2/31‑96 (MQ=255) aaaaGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑g < 2:155282/101‑1 (MQ=255) tcaaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATAttgcag‑gaaacacg > 2:990553‑M2/30‑95 (MQ=255) caaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATattgcag‑gaaacacgt < 2:589267‑M2/73‑8 (MQ=255) aaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATAtattgcag‑gaaacacgta < 1:898334‑M2/74‑9 (MQ=255) aaatgatttacatagtgcgctttgtttATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATAtattgcag‑gaaacacgta > 1:1191876‑M2/28‑93 (MQ=255) aGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑Ag < 2:48921/101‑1 (MQ=255) aGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑Ag < 1:1294158/101‑1 (MQ=255) gAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑Agg > 1:379431/1‑101 (MQ=255) aTAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGcc > 2:69197/1‑101 (MQ=255) tgaagacaaagTGCGCGTTGTTTATGCCGGATGCGGCGTGAACCCCTTATCCGGCCTAC‑AAA‑CCGCGCAAATTCAATATATTGC‑G‑GAGCA‑A‑AT‑GT‑AGGCCt > 1:1527132/11‑101 (MQ=0) gaagacgaagTGCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAC‑AAA‑CCGCGCAAATTCAATATATTGCGGAGAA‑A‑A‑T‑‑GT‑AGGCCTg > 1:1563366/10‑101 (MQ=2) tgactaagTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CAT‑GCAAATCCAAAATATTGCAG‑GAGTT‑A‑T‑‑GT‑AGGCCTGAt > 2:668236/8‑101 (MQ=2) tacatagTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGCAG‑GAA‑ACA‑C‑‑GT‑AGGCCTGAt > 1:1201495/7‑101 (MQ=14) gactaagTGCGCGTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CAT‑GCAAATCCAAAATATTGCAG‑GAGTT‑A‑T‑‑GT‑AGGCCTGATa > 1:255572/7‑101 (MQ=2) acatagTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGCAG‑GAA‑ACA‑C‑‑GT‑AGGCCTGATa > 1:220475/6‑101 (MQ=14) caaagTGCGCGTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAC‑AAA‑CCGCGCAAATTCAATATATTGC‑G‑GAG‑A‑A‑AATGT‑AGGCCTGATAAg < 2:377831/97‑1 (MQ=9) aaagTGCGCGTTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACAAAA‑ACTCATAAATTCAAAGTGTTGCAG‑GAA‑A‑A‑G‑‑GT‑AGGCCTGATAAGc < 1:1205855/98‑1 (MQ=2) aaagTGCGCGTTGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAGCG‑G‑T‑‑GT‑AGGCCTGATAAg > 1:1679547/4‑101 (MQ=2) ggTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGt < 2:555184/101‑1 (MQ=255) agTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGCAG‑GAA‑ACA‑C‑‑GT‑AGGCCTGATAAGCg < 1:1573930/100‑1 (MQ=14) aagtgcctgtGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAA‑CCAATTAAATTCAATAAATT‑AAA‑AAG‑C‑A‑T‑‑GT‑AGGCCTGATAAGCGTa > 2:822050/10‑101 (MQ=2) gTGCGCTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAATCGT‑GCAAATTCAAAATATTGCAG‑GGG‑ACG‑C‑‑GT‑AGGCCTGATAAGCGt < 2:699286/101‑1 (MQ=2) tGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGCAG‑GAA‑ACA‑C‑‑GT‑AGGCCTGATAAGCgaa < 2:290762/101‑3 (MQ=14) tGCGCGTTTTTTATGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACAAAA‑ACTCATAAATTCAAAGTGTTGCAG‑GAA‑A‑A‑G‑‑GT‑AGGCCTGATAAGCGTAg < 2:1466016/101‑1 (MQ=9) gcgctttgtttATGCCGGATGCGGCGAGAACGCCTTATCCGGCCAACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCATGATAAGCGTAgc < 2:1040999‑M2/90‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAA‑TCGTGCAAATTCAAAATATTGCAG‑GGG‑ACG‑C‑‑GT‑AGGCCTGATAAGCGTAgcg > 1:231280/1‑101 (MQ=2) cTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAA‑CTGTGCAAATTCAATATATTGCAG‑GAA‑A‑C‑AC‑GT‑AGGCCTGATAAGCGAAgcgc < 1:586322/101‑1 (MQ=11) cTTTGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAA‑TCGTGCAAATTCAAAATATTGCAG‑GGG‑ACG‑C‑‑GT‑AGGCCTGATAAGCGTAgcgc > 1:1710670/1‑101 (MQ=2) gttttttATGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACAAAA‑ACTCATAAATTCAAAGTGTTGCAG‑GAA‑A‑A‑G‑‑GT‑AGGCCTGATAAGCGTAGCGCAt < 2:1667206/97‑1 (MQ=9) ttgtttATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGTAGCGCATc > 2:1289139‑M2/7‑101 (MQ=255) ttGTTTATGCCGGATGCGGCACGAGCGCCTTATCCGGCCTACAAAA‑TCGTGCAAATTCAAAATATTGCAG‑GGG‑ACG‑C‑‑GT‑AGGCCTGATAAGCGTAGCGCAt > 1:621095/1‑101 (MQ=2) tGTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAG‑C‑G‑GT‑GT‑AGGCCTGATAAGCGTAGCGCATc < 2:724560/101‑1 (MQ=9) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAA‑CCAATTAAATTCAATAAATT‑AAA‑AAG‑C‑A‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAgg > 1:297684/1‑101 (MQ=2) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAA‑CCAATTAAATTCAATAAATT‑AAA‑AAG‑C‑A‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAgg < 2:23710/101‑1 (MQ=2) gTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAGCG‑G‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCa > 1:978196/1‑101 (MQ=9) gTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAGCG‑G‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCa < 1:441600/101‑1 (MQ=9) gTTCATGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATACATTGCAG‑GAG‑C‑GGT‑‑GT‑AGGCCTGATAAGCGTAGCGCATCa < 1:1152968/101‑1 (MQ=9) gTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CCTTGCGAATTCAATATATTGTAT‑G‑G‑A‑A‑A‑‑TTCAGGCCTGATAAGCGTAGCGCATCAg < 2:13553/101‑1 (MQ=2) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAA‑CCAATTAAATTCAATAAATT‑AAA‑AAG‑C‑A‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCa > 1:319954/1‑101 (MQ=2) ttATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGc < 2:949930‑M2/99‑1 (MQ=255) tATGCCGGATGCGGAGTCAACCCCTTATCCAGCCTACAAAA‑ACTCATAAATTCAAAGTGTTGCAG‑GAA‑A‑A‑G‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCa < 2:1694487/101‑1 (MQ=2) caTGCCGGATGCGGCGTGACCGCCTTATCCGTCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAGCG‑G‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGc < 1:1126021/100‑1 (MQ=2) aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAA‑CCAATTAAATTCAATAAATT‑AAA‑AAG‑C‑A‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAAt > 2:1647078/1‑101 (MQ=2) aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CCTTGCGAATTCAATATATTGTAT‑G‑G‑A‑A‑A‑‑TTCAGGCCTGATAAGCGTAGCGCATCAGGctt > 2:554935/1‑99 (MQ=2) aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CCTTGCGAATTCAATATATTGTAT‑G‑G‑A‑A‑A‑‑TTCAGGCCTGATAAGCGTAGCGCATCAGGctt > 1:1654704/1‑99 (MQ=2) tGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAGCG‑G‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCag > 1:570885/1‑100 (MQ=11) tGCCGGATGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAG‑CGG‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCag < 2:460475/101‑2 (MQ=2) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CCTTGCGAATTCAATATATTGTAT‑G‑G‑A‑A‑A‑‑TTCAGGCCTGATAAGCGTAGCGCATCAGGcttt < 2:92283/101‑4 (MQ=2) tGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAAt < 2:785193/101‑1 (MQ=255) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAA‑CCAATTAAATTCAATAAATT‑AAA‑AAG‑C‑A‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 2:1709940/1‑101 (MQ=2) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAA‑CCAATTAAATTCAATAAATT‑AAA‑AAG‑C‑A‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAAttt > 2:1520494/1‑101 (MQ=2) gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CCTTGCGAATTCAATATATTGTAT‑G‑G‑A‑A‑A‑‑TTCAGGCCTGATAAGCGTAGCGCATCAGGctttt < 2:63550/101‑5 (MQ=2) cGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CCTTGCGAATTCAATATATTGTAT‑G‑G‑A‑A‑A‑‑TTCAGGCCTGATAAGCGTAGCGCATCAGGcttttca > 2:127919/1‑95 (MQ=2) cGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CAT‑GCAAATCCAAAATATTGCAG‑GAGTT‑A‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 1:816203/1‑99 (MQ=11) cGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CAT‑GCAAATCCAAAATATTGCAG‑GAGTT‑A‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAtttat < 1:128847/101‑3 (MQ=2) ggATGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAGCG‑G‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAGtttt < 2:1500724/101‑1 (MQ=2) ggATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAATTTTg < 1:1389496‑M2/101‑2 (MQ=255) gATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAATTTtgt < 1:1652609/101‑1 (MQ=255) aTGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAGCG‑G‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAGTTTtgc > 2:1266366/1‑100 (MQ=2) aTGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAGCG‑G‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAGTTTtgc > 2:527790/1‑100 (MQ=2) aTGCGGCGTGACCGCCTTATCCGGCCTACGAAA‑CCGCAAGAATTCAATATATTGCAG‑GAG‑C‑G‑GT‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAGTTTtgc < 1:835501/101‑2 (MQ=2) aTGCGGCGTAAACGCCTTATCCAGCCTACAAAA‑ACTCATAAATTCAAAGTGTTGCAG‑GAA‑A‑A‑G‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAAtctctgg < 1:1465014/101‑7 (MQ=2) tGCGGCGTGAACGCCTTATCCGGCCTACAAAT‑CAT‑GCAAATCCAAAATATTGCAG‑GAGTT‑A‑T‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCATTTATgcgt < 1:1535263/101‑1 (MQ=2) gagaACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGTGTTTGtca > 2:1605209/1‑101 (MQ=255) agaACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGTGTTTGtcat < 2:1177345/101‑1 (MQ=255) agaACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGTGTTTGtcat > 1:524729/1‑101 (MQ=255) | GGCGTTAATCTGGCTGCTGACCAATCGACGTTTACGCGCTTGTTTTAATGAAGAAAAAGAATAACGCAGAGGTGCGCTTTGTTTATGCCGGATGCGGCGAGAACGCCTTATCCGGCCTACAAAA‑CATCGAAAATTCAATATATTGCAG‑GAG‑A‑A‑A‑‑GT‑AGGCCTGATAAGCGTAGCGCATCAGGCAATTTTGTGTTTGTCAT > 66/13252‑13451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |