New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 168 = 329890 (1.350)25 (0.440) 15/172 3.0 39.2% intergenic (–/–) –/– –/–
?3 = 80500 0 (0.000)intergenic (–/–) –/– –/–
Rejected: Coverage evenness skew score above cutoff.

TTTGAGCTGATCATTTTTCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGACG‑‑‑‑‑‑‑‑‑‑  >  3/80401‑80514
                                                                                                   |                        
tttGAGCTGATCATTTTTCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCtgt                         <  2:1163129/101‑1 (MQ=255)
         aTCATTTTTCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGc                >  1:1645917/1‑101 (MQ=255)
          tCATTTTTCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCg               >  2:463785/1‑101 (MQ=255)
           cATTTTTCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGa              <  1:668541/101‑1 (MQ=255)
            aTTTTTCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGAc             <  2:1168174/101‑1 (MQ=255)
            aTTTTTCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGAc             >  2:1407452/1‑101 (MQ=255)
              ttttCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGACgc           <  2:1146359/101‑2 (MQ=255)
               tttCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGACgct          >  1:858465/1‑99 (MQ=255)
                ttCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTTCGCCGCATCCTGTGCCTGATGCGACgctg         >  2:816255/1‑98 (MQ=255)
                ttCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGACgctg         >  2:285952/1‑98 (MQ=255)
                    tCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGACgctggcgc     <  1:607847/101‑8 (MQ=255)
                    tCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGACgctggcgc     <  2:1628660/101‑8 (MQ=255)
                       gtgAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGACgctggcgcgtc  >  1:618535/1‑91 (MQ=255)
                       gtgAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGACgctggcgcgtc  >  2:1715375/1‑91 (MQ=255)
                                                                                                   |                        
TTTGAGCTGATCATTTTTCGTCTGTGAAAAGGTGGTATATGCCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGACG‑‑‑‑‑‑‑‑‑‑  >  3/80401‑80514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.