New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	39	31074 =	61 (0.920)	22 (0.350)	18/190	2.6	43.2%	intergenic (–/–)	–/–	–/–
	?	89	= 18547	0 (0.000)					intergenic (–/–)	–/–	–/–

AGGGTGAAGCGTATATCGAGGGCGTTTGGTCGTCCTGATAAGATGCGCAGCATCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGAACGCCTTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  39/31178‑31074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAATCCGTCCCAA  <  89/18547‑18451                                                                                                                                                                                                            AGGGTGAAGCGTATATCGAGGGCGTTTGGTCGTCCTGATAAGATGCGCAGCATCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGAACGCCTTA                                                                                                       >  2:1531052/1‑101  GGGTGAAGCGTATATCGAGGGCGTTTGGTCGTCCTGATAAGATGCGCAGCATCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGAACGCCTTAT                                                                                                      <  1:1047637/101‑1   GGTGAAGCGTATATCGAGGGCGTTGGGTCGGCCTGATAAGATGCGCAGCATCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGAACGCCTTATC                                                                                                     <  2:134242/101‑1    GTGAAGCGTATATCGAGGGCGTTTGGTCGTCCTGATAAGATGCGCAGCATCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGGGAACGCCTTATCC                                                                                                    >  1:1649648/1‑101     TGAAGCGTATATCGAGGGCGTTTGGTCGTCCTGATAAGATGCGCAGCATCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGAACGCCTTATCCG                                                                                                   >  1:1119776/1‑101                                              gtaAGCGTCACATCAGGCAATGGTGCTCGGATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTT                                                          >  2:1604359/4‑101                                              gtaAGCGTCACATCAGGCAATGGTGCTCGGATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTT                                                          >  1:189669/4‑101                                               taAGCGTCACATCAGGCAATGGTGCTCGGATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTT                                                         >  2:886287/3‑101                                                aAGCGTCACATCAGGCAATGGTGCTCGGATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTT                                                        <  2:262059/100‑1                                                    gtcaCATCAGGCAATGGTGCTCGGATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCA                                                    >  1:1057086/5‑101                                                    gtcaCATCAGGCAATGGTGCTCGGATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCA                                                    <  1:1122114/97‑1                                                       aCATCAGGCAATGGTGCTCGGATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGC                                                 <  2:1599853/100‑1                                                         ATCAGGCAATGGTGCTCGGATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTC                                               >  2:916574/1‑101                                                                                CGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAG                        <  2:149229/101‑1                                                                                 GGATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGC                       >  1:157597/1‑101                                                                                   ATGCGGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCA                     <  1:303551/101‑1                                                                                       GGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGGCCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGT                 >  2:316549/1‑101                                                                                       GGCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGT                 <  1:107909/101‑1                                                                                        GCGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTT                <  1:1055666/101‑1                                                                                         CGTGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTT               >  2:1535155/1‑101                                                                                           TGAACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCA             >  2:589633/1‑101                                                                                             AACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAAT           <  1:1606015/101‑1                                                                                             AACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAAT           >  1:747406/1‑101                                                                                              ACGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGTCCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAATC          <  1:1506216/101‑1                                                                                               CGCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAATCC         <  2:570230/101‑1                                                                                                GCCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAATCCG        >  2:97934/1‑101                                                                                                 CCTTATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAATCCGT       >  2:904891/1‑101                                                                                                     ATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAATCCGTCCCA   <  2:161519/101‑1                                                                                                     ATCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAATCCGTCCCA   <  1:62842/101‑1                                                                                                      TCCGGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAATCCGTCCCAc  >  2:1403316/1‑100                                                                                                                                                                                                            AGGGTGAAGCGTATATCGAGGGCGTTTGGTCGTCCTGATAAGATGCGCAGCATCGCATCAGGCATTGATGCTCGACTGTCGGATGCGGCGTGAACGCCTTATCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  39/31178‑31074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccgGCCTACGAGATGAAGCGATGTTTTGGCCTTACGCGACCTTTTTTGCACGCTCTTCACGGCGTGCCAAATATTCAGCCACTGTTTCAATCCGTCCCAA  <  89/18547‑18451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.