New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | 25 | = 29432 | 30 (0.450) | 32 (0.490) +CGC |
27/194 | 1.4 | 68.7% | intergenic (–/–) | –/– | –/– |
? | 56 | = 26090 | 0 (0.000) | intergenic (–/–) | –/– | –/– |
CTGTATGAGCCTGTTTGTTGCTGGGGTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 25/29342‑29432 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTACTA < 56/26090‑25993 ||| CTGTATGAGCCTGTTTGTTGCTGGGGTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCT > 2:444250/1‑101 TGTTTGTTGCTGGGGTAACAATATTTGCACAATACGGTCGCCTCGACCCTCTGGGGAGAGGGTTAGGGGGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTG > 1:1692278/1‑101 TGTTTGTTGCTGGGGTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTG > 2:568268/1‑101 gcgGGGGTAACAATTTTTGCACAATCCGGCCCCCCCGCCCCTCGGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTC < 2:1369635/98‑1 GTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCT > 1:81810/1‑101 GTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCT > 1:771524/1‑101 GTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCT > 1:623226/1‑101 ACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGC > 1:215675/1‑101 CAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCA > 2:1182060/1‑101 ATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAACGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGCCCTGGCAAC > 1:11476/1‑101 ATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTA > 1:1429436/1‑101 CAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTAC > 1:284578/1‑101 AATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACT > 2:848077/1‑101 CGGTCCCCTCCCCCCTCTGGGGGGAGGGTGGGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACA < 2:1362334/101‑1 TCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCC > 2:305486/1‑101 CCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCA > 1:577500/1‑101 CCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAG > 2:500440/1‑101 CCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGG > 1:1054498/1‑101 CTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGT > 2:1364164/1‑101 GCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGA > 1:1533032/1‑101 ccctgggGGGGGGGGGGTGGGGGGGGGGGAAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGAT < 1:361713/94‑1 CCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTA > 1:1553815/1‑101 CTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGGTGATTAT > 2:913119/1‑101 GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACC > 1:1223949/1‑101 GAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGT > 1:457714/1‑101 GTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTAT > 1:1068817/1‑101 gggggggcgaGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTG < 2:569792/91‑1 GGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTG > 2:588921/1‑101 GAAAACCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGT > 2:1716913/1‑101 AGCGCCCCCCCTGCCGCAGCCTCCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTAC > 2:1688185/1‑101 GCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTACT < 2:360243/101‑1 GCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTACT > 1:455212/1‑101 CGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTACTA > 1:528528/1‑101 ||| CTGTATGAGCCTGTTTGTTGCTGGGGTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 25/29342‑29432 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTACTA < 56/26090‑25993 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |