New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 25 = 2943230 (0.450)32 (0.490)
+CGC
27/194 1.4 68.7% intergenic (–/–) –/– –/–
?56 = 26090 0 (0.000)intergenic (–/–) –/– –/–

CTGTATGAGCCTGTTTGTTGCTGGGGTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  25/29342‑29432
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTACTA  <  56/26090‑25993
                                                                                           |||                                                                                                  
CTGTATGAGCCTGTTTGTTGCTGGGGTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCT                                                                                             >  2:444250/1‑101
           TGTTTGTTGCTGGGGTAACAATATTTGCACAATACGGTCGCCTCGACCCTCTGGGGAGAGGGTTAGGGGGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTG                                                                                  >  1:1692278/1‑101
           TGTTTGTTGCTGGGGTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTG                                                                                  >  2:568268/1‑101
                   gcgGGGGTAACAATTTTTGCACAATCCGGCCCCCCCGCCCCTCGGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTC                                                                          <  2:1369635/98‑1
                         GTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCT                                                                    >  1:81810/1‑101
                         GTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCT                                                                    >  1:771524/1‑101
                         GTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCT                                                                    >  1:623226/1‑101
                            ACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGC                                                                 >  1:215675/1‑101
                             CAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCA                                                                >  2:1182060/1‑101
                               ATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAACGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGCCCTGGCAAC                                                              >  1:11476/1‑101
                                 ATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTA                                                            >  1:1429436/1‑101
                                        CAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTAC                                                     >  1:284578/1‑101
                                         AATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACT                                                    >  2:848077/1‑101
                                             CGGTCCCCTCCCCCCTCTGGGGGGAGGGTGGGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACA                                                <  2:1362334/101‑1
                                                TCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCC                                             >  2:305486/1‑101
                                                 CCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCA                                            >  1:577500/1‑101
                                                  CCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAG                                           >  2:500440/1‑101
                                                   CCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGG                                          >  1:1054498/1‑101
                                                    CTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGT                                         >  2:1364164/1‑101
                                                       GCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGA                                      >  1:1533032/1‑101
                                                        ccctgggGGGGGGGGGGTGGGGGGGGGGGAAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGAT                                     <  1:361713/94‑1
                                                          CCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTA                                   >  1:1553815/1‑101
                                                           CTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGGTGATTAT                                  >  2:913119/1‑101
                                                                  GAGAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACC                           >  1:1223949/1‑101
                                                                    GAGGGTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGT                         >  1:457714/1‑101
                                                                        GTTAGGGTGAGGGGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTAT                     >  1:1068817/1‑101
                                                                           gggggggcgaGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTG                  <  2:569792/91‑1
                                                                                    GGAAAAGCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTG         >  2:588921/1‑101
                                                                                     GAAAACCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGT        >  2:1716913/1‑101
                                                                                         AGCGCCCCCCCTGCCGCAGCCTCCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTAC    >  2:1688185/1‑101
                                                                                          GCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTACT   <  2:360243/101‑1
                                                                                          GCGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTACT   >  1:455212/1‑101
                                                                                           CGCCCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTACTA  >  1:528528/1‑101
                                                                                           |||                                                                                                  
CTGTATGAGCCTGTTTGTTGCTGGGGTAACAATATTTGCACAATACGGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  25/29342‑29432
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCCCCTGCCGCAGCCTGCTCCGGTCGGACCTGGCAACTATAGCTACTCACAGCCAGGTTGATTATAATAACCGTTTATCTGTTCGTACTGTTTACTA  <  56/26090‑25993

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.