Predicted mutation
evidence seq id position mutation annotation gene description
RA 51 15,117 G→A intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*5115,1170GA100.0% 227.8 / NA 65intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (39/26);  total (39/26)

CGTCGTTCGACAAATTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACGCGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATATTGTTCGT  >  51/15020‑15214
                                                                                                 |                                                                                                 
cgtcgtTCGACAAATTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGt                                                                                                >  2:655258/1‑101 (MQ=255)
cgtcgtTCGACAAATTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGt                                                                                                >  2:122388/1‑101 (MQ=255)
  tcgtTCGACAAATTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTc                                                                                              >  2:285892/1‑101 (MQ=255)
   cgtTCGACAAATTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCa                                                                                             >  2:1646396/1‑101 (MQ=255)
   cgtTCGACAAATTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGGTTCTACACGTTCa                                                                                             >  2:1443127/1‑101 (MQ=255)
    gtTCGACAAATTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCaa                                                                                            <  2:549878/101‑1 (MQ=255)
       cGACAAATTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGaa                                                                                         >  1:1058069/1‑101 (MQ=255)
        gACAAATTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAAt                                                                                        <  2:637392/101‑1 (MQ=255)
             aTTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGtt                                                                                   >  1:1380408/1‑101 (MQ=255)
             aTTTTGTAAGGTGATGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGtt                                                                                   <  2:1663566/101‑1 (MQ=255)
              ttttGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTtc                                                                                  <  2:90083/101‑1 (MQ=255)
               tttGTAAGGTGGTGAGCAACTCCTGGCTGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTtct                                                                                 <  1:12165/101‑1 (MQ=255)
                 tGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTcc                                                                               >  2:1696812/1‑101 (MQ=255)
                        tggtgAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCa                                                                        >  1:96676/1‑101 (MQ=255)
                         ggtgAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCAt                                                                       >  2:688939/1‑101 (MQ=255)
                               cAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTgt                                                                 >  2:1433812/1‑100 (MQ=255)
                               cAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGa                                                                 >  2:392959/1‑101 (MQ=255)
                               cAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGa                                                                 >  2:195496/1‑101 (MQ=255)
                                aaCTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGAt                                                                <  2:799156/101‑1 (MQ=255)
                                aaCTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGAt                                                                <  2:513633/101‑1 (MQ=255)
                                      tGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTtc                                                          >  2:171507/1‑101 (MQ=255)
                                      tGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTtc                                                          <  1:547232/101‑1 (MQ=255)
                                       ggCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTtct                                                         >  1:979576/1‑101 (MQ=255)
                                         cGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTcc                                                       <  1:1646402/101‑1 (MQ=255)
                                          ggTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTccc                                                      >  1:1448557/1‑101 (MQ=255)
                                          ggTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTccc                                                      >  1:1277070/1‑101 (MQ=255)
                                           gTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCa                                                     <  2:222343/101‑1 (MQ=255)
                                            ttAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAg                                                    >  2:795760/1‑101 (MQ=255)
                                            ttAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAg                                                    <  2:79367/101‑1 (MQ=255)
                                             tAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGc                                                   >  2:1010430/1‑101 (MQ=255)
                                              aGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCa                                                  >  2:1207382/1‑101 (MQ=255)
                                                catcatTGCCAGCGCGTGAAGATTTAGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACt                                                >  2:850925/1‑101 (MQ=255)
                                                 atcatTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACtt                                               >  1:352923/1‑101 (MQ=255)
                                                   catTGCCAGCGCGTGAAGATTTCGACAACTTACGGATTGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTg                                             >  1:165057/1‑101 (MQ=255)
                                                   catTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTg                                             <  2:204985/101‑1 (MQ=255)
                                                      tGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCg                                          <  2:161329/101‑1 (MQ=255)
                                                      tGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCg                                          >  2:272397/1‑101 (MQ=255)
                                                          aGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCa                                      <  1:559890/101‑1 (MQ=255)
                                                           gcgcGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCAt                                     <  1:1059388/101‑1 (MQ=255)
                                                               gTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTg                                 >  1:571645/1‑101 (MQ=255)
                                                               gTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTg                                 >  2:895263/1‑101 (MQ=255)
                                                               gTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTg                                 >  1:1111243/1‑101 (MQ=255)
                                                                tGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGa                                >  2:417599/1‑101 (MQ=255)
                                                                 gAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGAc                               <  1:1284192/101‑1 (MQ=255)
                                                                 gAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGAc                               <  2:1092421/101‑1 (MQ=255)
                                                                    gATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACAtt                            <  1:595637/101‑1 (MQ=255)
                                                                    gATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACAtt                            >  1:1045121/1‑101 (MQ=255)
                                                                     aTTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATta                           >  1:344405/1‑101 (MQ=255)
                                                                      tttCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATtac                          <  1:1442582/101‑1 (MQ=255)
                                                                      tttCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATtac                          <  2:1564305/101‑1 (MQ=255)
                                                                         cGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATtactac                       <  2:953914/101‑1 (MQ=255)
                                                                          gACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACg                      >  2:493494/1‑101 (MQ=255)
                                                                          gACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACg                      >  2:508793/1‑101 (MQ=255)
                                                                            cAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCa                    >  2:75477/1‑101 (MQ=255)
                                                                             aaCTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCaa                   >  1:681957/1‑101 (MQ=255)
                                                                               cTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATg                 >  1:380072/1‑101 (MQ=255)
                                                                                      aTAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAata          >  1:436597/1‑101 (MQ=255)
                                                                                        aGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATAtt        >  1:363555/1‑101 (MQ=255)
                                                                                        aGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATAtt        >  1:617355/1‑101 (MQ=255)
                                                                                         gTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATATTg       <  1:195496/101‑1 (MQ=255)
                                                                                         gTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATATTg       <  1:1691936/101‑1 (MQ=255)
                                                                                          tttCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATATTgt      <  2:1518001/101‑1 (MQ=255)
                                                                                           ttCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATATTgtt     <  1:617913/101‑1 (MQ=255)
                                                                                            tCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATATTgttc    <  2:1380402/101‑1 (MQ=255)
                                                                                             cTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATATTgttcg   >  2:228464/1‑101 (MQ=255)
                                                                                              tACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATATTgttcgt  >  1:1603105/1‑101 (MQ=255)
                                                                                                 |                                                                                                 
CGTCGTTCGACAAATTTTGTAAGGTGGTGAGCAACTCCTGGCGGTTAGCATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACGCGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAGCACTTTGCCGAGCATACTGACATTACTACGCAATGCGGAATATTGTTCGT  >  51/15020‑15214

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: