New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 36 = 332270 (0.000)27 (0.500)
+CACCACC
14/186 1.7 73.4% intergenic (–/–) –/– –/–
?51 15533 = 21 (0.470)intergenic (–/–) –/– –/–

ATCTCCTGGTGTTGGTTAGTCGTCATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  36/33129‑33227
                                                                                                  |                                                   
aTCTCCTGGTGTTGGTTAGTCGTCATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGca                                                   >  1:335247‑M1/1‑99 (MQ=255)
   tcCTGGTGTTGGTTAGTCGTCATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcacca                                                >  1:1002119‑M1/1‑96 (MQ=255)
    ccTGGTGTTGGTTAGTCGTCATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccac                                               >  1:386545‑M1/1‑95 (MQ=255)
        gtgtTGGTTAGTCGTCATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgcc                                           >  1:1434044‑M1/1‑91 (MQ=255)
                tAGTCGTCATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcgg                                   <  1:980310‑M1/101‑19 (MQ=255)
                     gtcATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcga                              <  1:1285896‑M1/101‑24 (MQ=255)
                     gtcATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcga                              >  2:135613‑M1/1‑78 (MQ=255)
                     gtcATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcga                              >  1:397423‑M1/1‑78 (MQ=255)
                     gtcATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcga                              >  1:703775‑M1/1‑78 (MQ=255)
                      tcATGGTTTCCCCTGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGGAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgag                             >  2:251297‑M1/1‑77 (MQ=255)
                      tcATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgag                             <  2:1023398‑M1/101‑25 (MQ=255)
                      tcATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgag                             <  1:260388‑M1/101‑25 (MQ=255)
                        aTGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgggag                           >  2:586777‑M1/1‑75 (MQ=255)
                          ggTTTCCCCCGGCGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgcc                         >  1:1577836‑M1/1‑73 (MQ=255)
                               cccccGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatc                    >  1:892681‑M1/1‑68 (MQ=255)
                                ccccGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatcc                   >  2:154626‑M1/1‑67 (MQ=255)
                                ccccGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatcc                   >  2:272852‑M1/1‑67 (MQ=255)
                                ccccGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatcc                   >  2:1560101‑M1/1‑67 (MQ=255)
                                 cccGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatccg                  <  1:585846‑M1/101‑36 (MQ=255)
                                       gtAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatccggcctac            >  1:224477‑M1/1‑60 (MQ=255)
                                       gtAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatccggcctac            >  2:632082‑M1/1‑60 (MQ=255)
                                        tAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCATCGcaccaccgccggatgcggcgcgagcgccttatccggcctacg           <  2:787602‑M1/101‑43 (MQ=255)
                                        tAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatccggcctacg           >  2:11031‑M1/1‑59 (MQ=255)
                                          aaGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatccggcctacgaa         >  1:96728‑M1/1‑57 (MQ=255)
                                            gCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGccccaccgccggatgcggcgcgagcgccttatccggcctacgaatc       <  1:283232‑M1/101‑47 (MQ=255)
                                             cGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatccggcctacgaatcg      >  1:1213838‑M1/1‑54 (MQ=255)
                                               tGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatccggcctacgaatcggc    <  1:319740‑M1/101‑50 (MQ=255)
                                                 cTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatccggcctacgaatcggcat  <  1:348048‑M1/101‑52 (MQ=255)
                                                 cTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatccggcctacgaatcggcat  <  1:1144157‑M1/101‑52 (MQ=255)
                                                 cTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCGcaccaccgccggatgcggcgcgagcgccttatccggcctacgaatcggcat  <  1:617435‑M1/101‑52 (MQ=255)
                                                                                                  |                                                   
ATCTCCTGGTGTTGGTTAGTCGTCATGGTTTCCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  36/33129‑33227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.