New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	51	1 =	0 (0.000)	70 (1.420)	48/186	0.0	61.1%	intergenic (–/–)	–/–	–/–
	?	91	8333 =	89 (1.560)					intergenic (–/–)	–/–	–/–

CCGCTCTGCTGGTAGCCGACCAGTACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  51/107‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctgaTGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCCGGCACTCTGT  >  91/8333‑8431                                                                                                                                                                                                                 CCGCTCTGCTGGTAGCCGACCAGTACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATT                                                                                                            <  2:216433/101‑1  CGCTCTGCTGGTAGCCGACCAGTACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTG                                                                                                           <  1:1077810/101‑1      CTGCTGGTAGCCGACCAGTACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTG                                                                                                       >  1:81207/1‑101        GCTGGTAGCCGACCAGTACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGAT                                                                                                     <  1:1313873/101‑1         CTGGTAGCCGACCAGTACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATG                                                                                                    <  2:27948/101‑1              AGCCGACCAGTACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTA                                                                                               >  1:1436065/1‑101               GCCGACCAGTACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTAC                                                                                              <  2:47457/101‑1                  GACCAGTACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCT                                                                                           >  2:503926/1‑101                         ACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGG                                                                                    <  2:1581766/101‑1                           GGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCC                                                                                  <  1:951474/101‑1                             TCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGTAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTA                                                                                >  1:817997/1‑101                              CAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAC                                                                               <  1:328775/101‑1                               AGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACG                                                                              <  2:775966/101‑1                                  GTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AA                                                                          <  1:1270309/101‑1                                   TTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AAT                                                                         >  1:1646012/1‑101                                           AAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAA                                                                 >  1:1403404/1‑101                                            AGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAAT                                                                <  1:1031071/101‑1                                            AGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAAT                                                                >  2:563011/1‑101                                               GTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATA                                                             >  1:437304/1‑101                                                   GAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGA                                                         >  1:737870/1‑101                                                    AATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAA                                                        <  1:209026/101‑1                                                    AATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAA                                                        <  2:644029/101‑1                                                    AATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTACCAGGCCTACGC‑ATTCTCTGCATTTTATTGAA                                                        >  2:1646246/1‑101                                                     ATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAAT                                                       >  1:1221608/1‑101                                                      TAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATT                                                      >  2:1404268/1‑101                                                      TAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATT                                                      >  2:370749/1‑101                                                      TAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATT                                                      >  2:475455/1‑101                                                       AACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTT                                                     <  2:1589600/101‑1                                                         CCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGC                                                   <  2:974740/101‑1                                                          CTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCG                                                  >  2:719083/1‑101                                                            ACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTACCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTG                                                >  1:332243/1‑101                                                                CAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTT                                            >  1:219194/1‑101                                                                 AAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTT                                           <  1:1137989/101‑1                                                                  AACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTG                                          <  1:385508/101‑1                                                                   ACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGT                                         >  2:797354/1‑101                                                                    CTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTg                                        >  2:1516969/1‑100                                                                    CTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTA                                        <  2:580994/101‑1                                                                     TCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAG                                       <  2:437299/101‑1                                                                      CCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGG                                      >  2:1417663/1‑101                                                                       CCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGC                                     <  2:719373/101‑1                                                                           CTTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGA                                 >  1:939380/1‑101                                                                            TTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGAT                                >  1:6206/1‑101                                                                            TTGTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGAT                                >  1:1281030/1‑101                                                                              GTCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAA                              >  1:70037/1‑101                                                                               TCCGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAG                             <  2:89795/101‑1                                                                                 CGGGAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGC                           >  1:998197/1‑101                                                                                   tgattacaAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGT                         >  2:314348/9‑101                                                                                   tgattacaAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGT                         >  2:1041641/9‑101                                                                                   tgattacaAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGT                         >  1:8495/9‑101                                                                                    GAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTT                        >  2:1207417/1‑101                                                                                    GAGTTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTT                        <  1:1673095/101‑1                                                                                     attacaAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTC                       >  2:3292/7‑101                                                                                     attacaAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTC                       >  2:1629822/7‑101                                                                                     attacaAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTC                       <  2:1448227/95‑1                                                                                      ttacaAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCA                      >  1:432680/6‑101                                                                                       tacaAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCAC                     <  2:1387261/97‑1                                                                                       TTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGTCTTACGC‑AATTTCGGCAATATATTGAATTTGCGTGCTTTTCTAGCCCGGATAAGTCGTTCAC                     <  2:745774/101‑1                                                                                       TTTGAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCAC                     <  2:1221603/101‑1                                                                                        acaAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACg                    <  1:997352/98‑2                                                                                        acaAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACg                    <  1:1553643/98‑2                                                                                         caAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACgc                   >  1:37537/3‑99                                                                                         caAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACgc                   >  2:1537112/3‑99                                                                                          aAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAACCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCC                  <  2:889280/100‑1                                                                                              GCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCAT              <  2:1176233/101‑1                                                                                               CAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATC             <  2:607837/101‑1                                                                                                AAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCC            <  2:787625/101‑1                                                                                                AAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCC            <  2:368073/101‑1                                                                                                AAAATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCC            >  2:635445/1‑101                                                                                                AAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCC            <  1:489255/101‑1                                                                                                AAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAT‑AATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCC            <  1:230882/101‑1                                                                                                AAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTATC‑CTGCAATATATTGAATTTGCAGGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCC            <  2:782534/101‑1                                                                                                AAAATTGCCTGATGCGCTACGCTTATCAGGCCTACACGTATC‑CTGCAATATATTGAATTTGCAGGTTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCC            <  2:1526067/101‑1                                                                                                  AATTGCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCCGG          >  1:211743/1‑101                                                                                                      GCCTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCCGGCACT      <  2:817992/101‑1                                                                                                        CTGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCCGGCACTCT    <  1:949576/101‑1                                                                                                         TGATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCCGGCACTCTG   >  2:684797/1‑101                                                                                                          GATGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCCGGCACTCTGT  <  2:219194/101‑1                                                                                                                                                                                                                 CCGCTCTGCTGGTAGCCGACCAGTACGGTCAGCGTTTCCTGCAAGAGTGGGAATAACCTACTCCAAACTCCCGGCTTGTCCGGGAGTTTGAACGCAAAATTGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  51/107‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctgaTGCGCTACGCTTATCAGGCCTACGC‑AATCTCTGCAATATATTGAATTTGCGTGCTTTTGTAGGCCGGATAAGGCGTTCACTCCGCATCCGGCACTCTGT  >  91/8333‑8431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.