New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	161	651 =	62 (0.900)	50 (0.780)	42/186	0.6	47.7%	intergenic (–/–)	–/–	–/–
	?	161	= 668	52 (0.810)					intergenic (–/–)	–/–	–/–

GTTTGAACTCGGGGAGAACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  161/756‑651 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagaacTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAGCGAGCCGCATC  <  161/668‑569                                                                                                                                                                                                                GTTTGAACTCGGGGAGAACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCC                                                                                                           >  2:1444430/1‑101   TTGAACTCGGGGAGAACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAG                                                                                                         <  1:1014732/101‑1   TTGAACTCGGGGAAAACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAG                                                                                                         <  1:704828/101‑1    TGAACTCGGGGAGAACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGA                                                                                                        >  1:701162/1‑101        CTCGGGGAGAACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTT                                                                                                    >  2:886163/1‑101          CGGGGAGAACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCC                                                                                                  >  2:863320/1‑101           GGGGAGAACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCG                                                                                                 >  2:762735/1‑101                 AACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTT                                                                                           >  2:1428064/1‑101                 AACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTT                                                                                           >  1:1186891/1‑101                 AACGAAAAAAACCAGATGCTGTACAGCATGAAGGTCCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTT                                                                                           <  2:283074/101‑1                        AAAACCAGACGCTGGACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAAC                                                                                    <  1:1599725/101‑1                         AAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACG                                                                                   >  2:568482/1‑101                           ACCAGATGCTGTACAGCCTGAAGGTGCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAG                                                                                 <  2:426881/101‑1                           ACCAGATGCTGTACAGCATGAAGGTGCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAG                                                                                 <  2:362395/101‑1                           ACCAGATGCAGTCCAGCGTGAAGGTCCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAG                                                                                 <  2:1171162/101‑1                            ccggagGCTGTACAGGATGAAGGTCCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGG                                                                                <  1:204896/95‑1                            CCAGATGCTGTACAGCATGAGGGTCCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGG                                                                                <  2:1463290/101‑1                            CCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGG                                                                                >  1:1200564/1‑101                             aAGATGTTGCACGGCAGGAGGGCGCGCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGA                                                                               <  2:605377/100‑1                             CAGAGGCTGAAAAGATTGAGGGTGCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGA                                                                               <  1:1296919/101‑1                               gagGCTGTACAGCATGAAGGGGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACA                                                                             <  1:863325/98‑1                                ATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACAT                                                                            >  1:1021030/1‑101                                    TGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAA                                                                        >  1:735927/1‑101                                       ACAGCAGGAAGGTGCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGC                                                                     <  1:1439202/101‑1                                        CAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCA                                                                    >  1:1458131/1‑101                                         AGCATGAAGGTCCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCAT                                                                   <  2:1251498/101‑1                                           CATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCC                                                                 >  1:148427/1‑101                                            ATGAGGGTGCCCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCT                                                                <  1:1510681/101‑1                                            ATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCT                                                                >  1:1229356/1‑101                                               AAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGG                                                             >  2:327908/1‑101                                                  gcgccCCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCAC                                                          <  2:1113425/96‑1                                                     ccCCCGCCGCTTTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGTACATCAAAAGCATCCTCGGCACGAT                                                       <  2:434014/99‑1                                                        cctCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTT                                                    <  2:699894/98‑1                                                              CTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGA                                              >  2:1003268/1‑101                                                                 TGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAA                                           <  2:250898/101‑1                                                                  GGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAAC                                          <  1:1334610/101‑1                                                                       GCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGT                                     <  1:886168/101‑1                                                                       GCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGT                                     <  2:281015/101‑1                                                                           GTCTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACC                                 <  1:436656/101‑1                                                                             CTGCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGA                               >  2:1294326/1‑101                                                                               GCGCCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAAT                             <  2:257902/101‑1                                                                                  CCAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGA                          >  1:120686/1‑101                                                                                   CAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAG                         <  2:640102/101‑1                                                                                   CAGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAG                         <  2:46357/101‑1                                                                                    AGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGT                        >  2:86880/1‑101                                                                                    AGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGT                        <  1:149043/101‑1                                                                                    AGAACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGT                        <  2:371515/101‑1                                                                                      AACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCC                      <  1:1502350/101‑1                                                                                       ACTTCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGGCCG                     >  1:1491087/1‑101                                                                                          TCCGTATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTG                  >  1:536724/1‑101                                                                                              TATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCA              >  2:112651/1‑101                                                                                               ATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAG             <  1:88616/101‑1                                                                                               ATCTTCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAG             >  2:1333152/1‑101                                                                                                   TCCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAGCGAG         <  2:952489/101‑1                                                                                                    CCAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAGCGAGC        >  2:303532/1‑101                                                                                                     CAGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAGCGAGCC       >  1:1317275/1‑101                                                                                                      AGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAGCGAGCCG      >  2:154349/1‑101                                                                                                      AGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAGCGAGCCG      >  1:291284/1‑101                                                                                                      AGAACTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGACGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAGCGAGCCG      <  2:807134/101‑1                                                                                                          CTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAGCGAGCCGCATC  >  2:662568/1‑101                                                                                                          CTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATAGAGTCCGCTGTTCAGCGAGCCGCATC  >  2:1464571/1‑101                                                                                                                                                                                                                GTTTGAACTCGGGGAGAACGACAAAAACCAGATGCTGTACAGCATGAAGGTGCACCCGCCGCTGTGGCGTGCCGGTCTGCGCCAGAACTTCCGTATCTTCCAGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  161/756‑651 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagaacTTCCGTATCTTCCAGAACGAGGACATCAAAAGCATCCTCGGCACGATGTTGCAGGAAAACGGGGTGACCGAATGGAGTCCGCTGTTCAGCGAGCCGCATC  <  161/668‑569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.