Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 4,628,460 | T→G | T3P (ACC→CCC) | arcA ← | DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 4,628,460 | 0 | T | G | 97.1% | 261.4 / ‑2.1 | 69 | T3P (ACC→CCC) | arcA | DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA |
Reads supporting (aligned to +/- strand): ref base T (2/0); new base G (38/29); total (40/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.06e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
ATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGC > REL606/4628362‑4628556 | aTCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCt < 1:291888/101‑1 (MQ=255) gTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCAt > 2:1334320/1‑101 (MQ=255) gTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCAt < 2:356677/101‑1 (MQ=255) gTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCAt < 1:324683/101‑1 (MQ=255) gTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAAAGATACGAATGTGCGGGGGCTGCAt > 1:761040/1‑101 (MQ=255) cGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGt > 1:1696988/1‑101 (MQ=255) gCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGtt > 2:763337/1‑101 (MQ=255) cTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGttt > 1:1020377/1‑101 (MQ=255) tCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGc < 1:1610286/101‑1 (MQ=255) cGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCt < 1:291538/101‑1 (MQ=255) gAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTa > 1:445587/1‑101 (MQ=255) aaaaCATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTAc > 2:1353059/1‑101 (MQ=255) aaaCATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTAcc > 2:1026732/1‑101 (MQ=255) aaaCATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTAcc > 1:1347097/1‑101 (MQ=255) aaCATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCt > 2:572270/1‑101 (MQ=255) atAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTg > 2:146129/1‑101 (MQ=255) cTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAAc < 2:703380/101‑1 (MQ=255) cGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTaaa < 2:160711/101‑1 (MQ=255) ttCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCg > 1:204220/1‑101 (MQ=255) ttCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCg > 2:472050/1‑101 (MQ=255) cGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaa > 1:1244597/1‑101 (MQ=255) cGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaa > 2:801855/1‑101 (MQ=255) aaaaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAAc > 2:784193/1‑101 (MQ=255) aaaaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAAc > 1:1436953/1‑101 (MQ=255) aaaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACa > 1:247448/1‑101 (MQ=255) aaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAg < 2:1088868/101‑1 (MQ=255) aaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAg > 1:1597474/1‑101 (MQ=255) aTACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAgg > 2:476920/1‑101 (MQ=255) aCTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGaa < 2:107043/101‑1 (MQ=255) ttCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTAc > 1:220287/1‑101 (MQ=255) ttCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTAc < 2:1696982/101‑1 (MQ=255) ttCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTAc < 1:710216/101‑1 (MQ=255) aaCGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACaaa > 1:764044/1‑101 (MQ=255) aaCGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACaaa < 1:146129/101‑1 (MQ=255) aaCGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACaaa < 1:1677806/101‑1 (MQ=255) cGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAg > 2:1591039/1‑101 (MQ=255) cGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAg > 2:1394655/1‑101 (MQ=255) tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTc > 2:576259/1‑101 (MQ=255) gtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTcc > 1:173720/1‑101 (MQ=255) ttGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTccc < 2:1048324/101‑1 (MQ=255) ttGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTccc > 2:586576/1‑101 (MQ=255) ttGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTccc < 2:1381846/101‑1 (MQ=255) tGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCt > 2:1278570/1‑101 (MQ=255) gCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTg < 2:913701/101‑1 (MQ=255) gCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTg < 1:522114/101‑1 (MQ=255) tgtTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcc < 1:605551/101‑1 (MQ=255) gtTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcct > 1:396020/1‑101 (MQ=255) ttACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctg > 1:773289/1‑101 (MQ=255) cAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctgcctg > 1:893232/1‑101 (MQ=255) cAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctgcctg > 1:1528234/1‑101 (MQ=255) aaCTCGTTTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGa > 2:153512/1‑101 (MQ=255) aaCTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGa > 1:1227498/1‑101 (MQ=255) aCTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGat < 2:445582/101‑1 (MQ=255) aCTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGat < 2:1597468/101‑1 (MQ=255) cTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGatg < 1:1353065/101‑1 (MQ=255) cTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGatg < 1:851128/101‑1 (MQ=255) cTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGatg < 2:247205/101‑1 (MQ=255) cGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGatgca < 2:204220/101‑1 (MQ=255) cGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGatgca > 1:240910/1‑101 (MQ=255) cGTATTCAACGATAACAATGTGTGTGGGGTTCATGCTTGCTACCTAAATTGCCAACTAAATCGAAACAGAAAGTACAAAAGCCCATGAcctgcctgccgca > 2:255308/1‑96 (MQ=255) tttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGatgcatgc < 1:279676/101‑1 (MQ=255) ttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCAtgct < 1:295700/101‑1 (MQ=255) tCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCAtgctg > 1:881248/1‑101 (MQ=255) cAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCAtgctgc > 2:1147790/1‑101 (MQ=255) gATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGCCCTGCCTGATGCATGCTGCAAAt < 2:1020372/101‑1 (MQ=255) aaTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACAt > 2:1357353/1‑101 (MQ=255) aTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATg > 1:172561/1‑101 (MQ=255) tgtgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGa < 2:1464535/101‑1 (MQ=255) tgtgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGa < 1:1199774/101‑1 (MQ=255) cGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCgg > 1:405729/1‑101 (MQ=255) ggggGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGc > 2:894569/1‑101 (MQ=255) ggggGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGc > 1:447398/1‑101 (MQ=255) | ATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATGCTGCAAATTAACATGATCGGC > REL606/4628362‑4628556 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |