Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 3,684,366 | C→A | R216S (CGT→AGT) | ECB_03438 → | conserved hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,684,366 | 0 | C | A | 98.5% | 235.5 / ‑3.3 | 67 | R216S (CGT→AGT) | ECB_03438 | conserved hypothetical protein |
Reads supporting (aligned to +/- strand): ref base C (0/1); new base A (38/28); total (38/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.33e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.35e-01 |
CCTGGTCACCCGGAAATTGAACTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGCGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGATGGTGAAAGACAA > REL606/3684270‑3684463 | ccTGGTCACCCGGAAATTGAACTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAgtgg < 1:1015476/101‑1 (MQ=255) tGGTCACCCGGAAATTGAACTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAgtggtg < 2:1671973/101‑1 (MQ=255) gTCACCCGGAAATTGAACTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTgcg > 2:523057/1‑101 (MQ=255) cACCCGGAAATTGAACTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCa > 1:569180/1‑101 (MQ=255) ggAAATTGAACTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGc > 2:1113517/1‑101 (MQ=255) aaTTGAACTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACt < 1:1219635/101‑1 (MQ=255) ttGAACTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTAt < 1:456541/101‑1 (MQ=255) tGAACTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTAtt < 1:1124267/101‑1 (MQ=255) aaCTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTAc < 2:646639/101‑1 (MQ=255) aaCTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTAc < 2:675421/101‑1 (MQ=255) aaCTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTAc < 1:512047/101‑1 (MQ=255) aCTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACg < 1:606439/101‑1 (MQ=255) cTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGa > 2:1188151/1‑101 (MQ=255) ggCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGAcc > 2:1350908/1‑101 (MQ=255) cACTAATGCGCCTGTATGAGGTGACTGAAGAGCAGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCaa > 2:1059474/1‑101 (MQ=255) aCTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAg < 2:1550728/101‑1 (MQ=255) tAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGaa > 1:1449481/1‑101 (MQ=255) tGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAatat < 1:303974/101‑1 (MQ=255) cgcCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGa < 2:548210/101‑1 (MQ=255) gcCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGaa < 1:143679/101‑1 (MQ=255) gcTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGaaa < 1:1071028/100‑1 (MQ=255) cTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGaaaa < 2:569175/101‑1 (MQ=255) cTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGAGGTGCGCAACCGCACTATTACGACCAAGAATATGaaaa > 2:337437/1‑101 (MQ=255) tgtaggaGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAgc < 1:951086/95‑1 (MQ=255) tGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGcgcg > 1:14690/1‑101 (MQ=255) tGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGcgcg > 1:1586937/1‑101 (MQ=255) aaGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCggg > 2:217593/1‑101 (MQ=255) aGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGc > 2:1132533/1‑101 (MQ=255) tGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAg < 1:415063/101‑1 (MQ=255) gACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGa < 2:1278224/101‑1 (MQ=255) aCTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGAc > 2:1633439/1‑101 (MQ=255) cTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACa > 1:247718/1‑101 (MQ=255) tGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACCGAGAGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACAt > 2:577081/1‑101 (MQ=255) tGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACAt < 2:449416/101‑1 (MQ=255) tGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGCGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACAt > 1:1580347/1‑101 (MQ=255) agagCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGc > 1:1145284/1‑101 (MQ=255) agagCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGc < 1:350651/101‑1 (MQ=255) gagCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCa < 2:1015961/101‑1 (MQ=255) agCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGCGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCAc < 2:892244/101‑1 (MQ=255) agCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCAc > 1:1049036/1‑101 (MQ=255) agCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCAc < 2:602431/101‑1 (MQ=255) gCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACt > 1:1518895/1‑101 (MQ=255) cgcgCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTgg > 2:1471675/1‑101 (MQ=255) cgcgCTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTgg > 1:1475490/1‑101 (MQ=255) cgcTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGca > 1:1155784/1‑101 (MQ=255) cgcTACCTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGca > 1:939821/1‑101 (MQ=255) ccTGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCt < 2:440696/101‑1 (MQ=255) cTGGCGCTGACGAGCTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTa > 1:1352099/1‑101 (MQ=255) tGGCGCTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTAc < 1:1025074/101‑1 (MQ=255) cgcTGACGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGc < 1:1188156/101‑1 (MQ=255) cgcTGACGAACTATTTTGTCGAACAGAGGGGGGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGc > 2:366769/1‑101 (MQ=255) aCGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGc > 2:369523/1‑101 (MQ=255) cGAACTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCg > 2:1277432/1‑101 (MQ=255) cGAACTATTTTGTCGAACAGAGTGGGGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTCAGGCCCGGCg > 2:1323023/1‑101 (MQ=255) aaCTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCgcg > 2:1449511/1‑99 (MQ=255) aCTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTgg > 1:443448/1‑101 (MQ=255) cTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGa > 1:1618714/1‑101 (MQ=255) cTATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGa > 2:1134217/1‑101 (MQ=255) tATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGAt < 1:217593/101‑1 (MQ=255) tATTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGAt > 2:832704/1‑101 (MQ=255) aTTTTGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGATg > 2:275374/1‑101 (MQ=255) ttttGTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGATgg < 2:627530/101‑1 (MQ=255) gTCGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGATGGTGaa < 2:1449475/101‑1 (MQ=255) cGAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCAGGCGCGGATGGGGaaat > 2:265973/1‑100 (MQ=255) gAACAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGATGGTGAAAGa > 1:818216/1‑101 (MQ=255) aaCAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGATGGTGAAAGAc > 2:1677794/1‑101 (MQ=255) cAGAGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGATGGTGAAAGACaa > 2:736408/1‑101 (MQ=255) | CCTGGTCACCCGGAAATTGAACTGGCACTAATGCGCCTGTATGAAGTGACTGAAGAGCCGCGCTACCTGGCGCTGACGAACTATTTTGTCGAACAGCGTGGTGCGCAACCGCACTATTACGACCAAGAATATGAAAAGCGCGGGCAGACATCGCACTGGCACACCTACGGCCCGGCGTGGATGGTGAAAGACAA > REL606/3684270‑3684463 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |