Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 3,533,061 | T→G | K124N (AAA→AAC) | ftsE ← | predicted transporter subunit: ATP‑binding component of ABC superfamily |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,533,061 | 0 | T | G | 98.5% | 262.1 / ‑4.3 | 66 | K124N (AAA→AAC) | ftsE | predicted transporter subunit: ATP‑binding component of ABC superfamily |
Reads supporting (aligned to +/- strand): ref base T (0/1); new base G (45/20); total (45/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.18e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 |
CGGGCTTATTCACCACCGCGCGGGCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACTTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCA > REL606/3532964‑3533158 | cgGGCTTATTCACCACCGCGCGGGCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTa > 2:268034/1‑101 (MQ=255) gggCTTATTCACCACCGCGCGGGCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTAt > 2:1560615/1‑101 (MQ=255) ggCTTATTCACCACCGCGCGGGCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATc > 1:1656663/1‑101 (MQ=255) tATTCACCACCGCGCGGGCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGt > 2:419044/1‑101 (MQ=255) tATTCACCACCGCGCGGGCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGt < 2:435514/101‑1 (MQ=255) aTTCACCACCGCGCGGGCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTg > 2:1149515/1‑101 (MQ=255) accaccGCGCGGGCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTgccgc > 1:85193/1‑101 (MQ=255) accaccGCGCGGGCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTgccgc > 2:692038/1‑101 (MQ=255) gggCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCgg > 2:1031775/1‑101 (MQ=255) cAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGcga > 1:118806/1‑101 (MQ=255) aaTGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGcgac > 1:1163514/1‑101 (MQ=255) aaTGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGcgac < 1:1513581/101‑1 (MQ=255) aTGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGcgacg > 1:1569294/1‑101 (MQ=255) gCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGCCGaa > 2:727566/1‑101 (MQ=255) ccAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACTTTATCCAGTGCCGCCGACACCCGGCGACGAat < 2:561029/101‑1 (MQ=255) cAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAata < 2:1133919/101‑1 (MQ=255) aaCACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAatat > 1:1563112/1‑101 (MQ=255) aaCACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAatat > 1:1206948/1‑101 (MQ=255) acacGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATc < 1:738308/101‑1 (MQ=255) gCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCa > 2:141163/1‑101 (MQ=255) cTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCAc > 1:60425/1‑101 (MQ=255) gttgttCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCg < 2:852345/101‑1 (MQ=255) ttgttCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGCATATCGTCACCGc > 1:1700013/1‑101 (MQ=255) ttgttCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGc > 1:541538/1‑101 (MQ=255) tgttCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCt > 1:1654798/1‑101 (MQ=255) aCCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCAc > 1:1694911/1‑101 (MQ=255) gCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAg > 2:304577/1‑101 (MQ=255) cccGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGc < 2:816891/101‑1 (MQ=255) cGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGa < 2:986507/101‑1 (MQ=255) gAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGAt < 1:1466851/101‑1 (MQ=255) gCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATc > 1:605199/1‑101 (MQ=255) cTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCa < 2:1049644/101‑1 (MQ=255) aaTAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCg > 1:827632/1‑101 (MQ=255) aaTAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCg < 1:692043/101‑1 (MQ=255) aTAGGGAAGTTCTTTGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCgg < 2:168776/101‑1 (MQ=255) aTAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCgg > 1:1099838/1‑101 (MQ=255) aGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGa > 2:1653043/1‑101 (MQ=255) aGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGa > 2:710519/1‑101 (MQ=255) gggAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGAt > 2:1495713/1‑101 (MQ=255) gggAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGAt > 2:361769/1‑101 (MQ=255) ggAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATc < 1:397914/101‑1 (MQ=255) ggAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATc < 2:85193/101‑1 (MQ=255) ggAAGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATc > 1:933611/1‑101 (MQ=255) aGTTCTTCGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGcc > 2:707640/1‑101 (MQ=255) tcttcGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACg > 1:470730/1‑101 (MQ=255) ttcGCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGtt > 1:1065284/1‑101 (MQ=255) gcgttGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATc > 1:1427932/4‑101 (MQ=255) gCTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATc < 2:22218/101‑1 (MQ=255) cTTTGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCg > 1:1446158/1‑101 (MQ=255) tttGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGt > 1:1641388/1‑101 (MQ=255) ttGTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTa < 2:1198829/101‑1 (MQ=255) gTCGAGAAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGa < 1:1024306/101‑1 (MQ=255) gTCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGa > 2:1112186/1‑101 (MQ=255) tCCAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGAc < 1:1226604/101‑1 (MQ=255) ccAGTAGCCCGACGTTATCCAGTTCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACa > 1:542670/1‑101 (MQ=255) cAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAg < 1:1031780/101‑1 (MQ=255) cAGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAg > 2:629883/1‑101 (MQ=255) aGTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGt > 2:387074/1‑101 (MQ=255) gTAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTa > 1:446739/1‑101 (MQ=255) tAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTAc > 2:1256814/1‑101 (MQ=255) tAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTAc > 2:553043/1‑101 (MQ=255) tAGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACCAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTAc < 2:113960/101‑1 (MQ=255) aGCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACg < 2:630017/101‑1 (MQ=255) gCCCGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACgg < 2:1569288/101‑1 (MQ=255) cccGACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGt > 2:781616/1‑101 (MQ=255) gACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAGTCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCa > 1:1121720/1‑101 (MQ=255) gACGTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCa > 1:1246942/1‑101 (MQ=255) | CGGGCTTATTCACCACCGCGCGGGCAATGCCAACACGCTGTTGTTCACCGCCCGAAAGCTGAATAGGGAAGTTCTTCGCTTTGTCCAGTAGCCCGACTTTATCCAGTGCCGCCGACACCCGGCGACGAATATCGTCACCGCTGGCACCAGCGATAATCAGCGGGATCGCCACGTTATCGTAGACAGTACGGTCCA > REL606/3532964‑3533158 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |