Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 3,396,621 | T→G | N380H (AAC→CAC) | chiA ← | periplasmic endochitinase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,396,621 | 0 | T | G | 98.7% | 295.0 / NA | 78 | N380H (AAC→CAC) | chiA | periplasmic endochitinase |
Reads supporting (aligned to +/- strand): ref base T (0/1); major base G (28/48); minor base C (0/1); total (28/50) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATT > REL606/3396524‑3396718 | gCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGAtt > 2:1505034/1‑101 (MQ=255) caacaaTGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTg > 1:1546175/1‑101 (MQ=255) caacaaTGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTg > 1:1303962/1‑101 (MQ=255) caaTGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAg < 1:687992/101‑1 (MQ=255) caaTGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAg > 1:1497516/1‑101 (MQ=255) caaTGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAg < 2:895884/101‑1 (MQ=255) aTGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGtt < 2:144216/101‑1 (MQ=255) aTGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGtt > 1:1385972/1‑101 (MQ=255) tggcgccgcCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTCATTGGAGttt < 2:1131589/98‑1 (MQ=255) gACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGtttt < 1:83450/101‑1 (MQ=255) aCGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTc < 1:368195/101‑1 (MQ=255) cgccgcCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCa < 2:1428309/101‑1 (MQ=255) ccgccgTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAgc < 1:407287/101‑1 (MQ=255) cgTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTg > 2:978717/1‑101 (MQ=255) gTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTgg > 2:1448262/1‑101 (MQ=255) gTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTgg > 2:1120044/1‑101 (MQ=255) gTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTgg > 1:1178170/1‑101 (MQ=255) gTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTgg > 1:160559/1‑101 (MQ=255) gTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTgg > 2:1588589/1‑101 (MQ=255) ttATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGt > 2:1240829/1‑101 (MQ=255) ttATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGt < 2:660719/101‑1 (MQ=255) tATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTa > 1:533052/1‑101 (MQ=255) aTCAATTTCACAGGTAGTCGGGTTACCGTGCTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTAc < 1:960889/101‑1 (MQ=255) aTCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTAc > 1:1487564/1‑101 (MQ=255) ataaTTTCACAGGTAGTCGAGTTACCGTTCTGACTCGATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTAcc < 1:1638679/99‑1 (MQ=255) aaTTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTAcccc > 2:1663507/1‑101 (MQ=255) aaTTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTAcccc < 2:946228/101‑1 (MQ=255) aaTTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTAcccc > 2:1039547/1‑101 (MQ=255) tttCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGt > 2:1489997/1‑101 (MQ=255) ttCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTg > 2:298584/1‑101 (MQ=255) cacaGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTggg > 2:138901/1‑101 (MQ=255) aGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCaa > 1:1648019/1‑101 (MQ=255) tAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCt < 1:612048/101‑1 (MQ=255) tAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCt < 2:645680/101‑1 (MQ=255) gTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCttt < 2:341063/101‑1 (MQ=255) cGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAg < 1:1015225/101‑1 (MQ=255) cGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAg < 2:286279/101‑1 (MQ=255) gTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGacccaaccc < 1:1277270/101‑1 (MQ=255) gTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGacccaaccc < 2:121329/101‑1 (MQ=255) tACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGacccaaccca < 2:23168/101‑1 (MQ=255) tACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGacccaaccca > 1:868292/1‑101 (MQ=255) tGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACccacca > 2:1354202/1‑101 (MQ=255) tGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACccacca > 1:812871/1‑101 (MQ=255) tGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACccacca > 2:505802/1‑101 (MQ=255) tGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACccacca < 2:703944/101‑1 (MQ=255) gACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAg < 1:681645/101‑1 (MQ=255) aaTTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGtt < 2:1717804/101‑1 (MQ=255) ccGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTg < 2:1069788/101‑1 (MQ=255) cGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGt < 1:612857/101‑1 (MQ=255) cAGCGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGGTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTaa < 2:1546169/101‑1 (MQ=255) cGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa > 2:386744/1‑101 (MQ=255) cGGTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACa < 1:1448268/101‑1 (MQ=255) ggTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAt < 2:569266/101‑1 (MQ=255) ggTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAt < 1:829609/101‑1 (MQ=255) gTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt < 1:775176/101‑1 (MQ=255) gTAGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACAtt < 1:298584/101‑1 (MQ=255) aGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTAc < 1:1655843/101‑1 (MQ=255) aGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTAc < 1:6004/101‑1 (MQ=255) aGCTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTAc > 2:549613/1‑101 (MQ=255) cTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCa < 1:1505040/101‑1 (MQ=255) cTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCa < 1:1680934/101‑1 (MQ=255) cTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCa < 1:1398338/101‑1 (MQ=255) cTGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCa < 2:48756/101‑1 (MQ=255) atGTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCACCCCACCAGGCGTTCTTGTAAACATTACCa < 2:206489/100‑1 (MQ=255) gTACGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCAtt > 1:288505/1‑101 (MQ=255) cGCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaa < 1:138901/101‑1 (MQ=255) gCTCGAGCCGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTGCCATTGaaa < 2:1389014/101‑1 (MQ=255) gCTCGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGAACCAACCCACCAGGCGTTCTTGTAAACATTACCATTGaaa < 1:1173959/101‑1 (MQ=255) cGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATa > 2:1120856/1‑101 (MQ=255) cGAGACGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATa > 1:1207281/1‑101 (MQ=255) agaCGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAAc < 2:288505/101‑1 (MQ=255) agaCGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAAc < 1:1140385/101‑1 (MQ=255) cGCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATg < 1:1238300/101‑1 (MQ=255) gCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg < 1:1240834/101‑1 (MQ=255) gCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg < 2:1303956/101‑1 (MQ=255) gCCATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATgg < 1:1663513/101‑1 (MQ=255) ccATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGt < 1:1436437/101‑1 (MQ=255) cATGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTa < 1:1377480/101‑1 (MQ=255) aTGGGTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTaa < 2:1126205/101‑1 (MQ=255) gggTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAt < 2:1539348/101‑1 (MQ=255) ggTGATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAAtt < 1:1120049/101‑1 (MQ=255) | GCAACAATGACGCCGCCGTTATCAATTTCACAGGTAGTCGGGTTACCGTACTGACTCAATTCCGCAGCGGTAGCTGTACGCTCGAGACGCCATGGGTTATTGGAGTTTTCAGCGCTGGTACCCCGTGGGCAATCTTTAGACCCAACCCACCAGGCGTTCTTGTAAACATTACCATTGAAAATAACATGGTAAATT > REL606/3396524‑3396718 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |