Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 3,328,272 | A→G | V236A (GTT→GCT) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,328,272 | 0 | A | G | 98.4% | 238.3 / ‑4.3 | 64 | V236A (GTT→GCT) | mreB | cell wall structural complex MreBCD, actin‑like component MreB |
Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (32/31); total (33/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.07e-01 |
ACAATACCGGTCAGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAACTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAACCGTAATTACG > REL606/3328176‑3328369 | acaATACCGGTCAGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTc > 2:1246304/1‑101 (MQ=255) acaATACCGGTCAGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTc < 2:1359626/101‑1 (MQ=255) cGGTCAGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCa < 2:478614/101‑1 (MQ=255) gTCAGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACg > 1:994120/1‑101 (MQ=255) gTCAGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACg > 1:1483251/1‑101 (MQ=255) tCAGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACgg < 1:351014/101‑1 (MQ=255) tCAGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACgg < 2:445531/101‑1 (MQ=255) aGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGAc > 2:1526294/1‑101 (MQ=255) aGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGAc > 1:835691/1‑101 (MQ=255) ggTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTc > 1:1023560/1‑101 (MQ=255) ttCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCAt > 1:220264/1‑101 (MQ=255) ccTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCTAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCg > 2:1371754/1‑101 (MQ=255) ccTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCg < 1:670814/101‑1 (MQ=255) acTGAAGTGCTTCGAGGTATTCATTGGAGTACAGGGTAAATCCGCGTGGAACTCCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATcn < 1:825709/100‑2 (MQ=255) tGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACCCCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGAt < 2:994115/101‑1 (MQ=255) cTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATaa < 1:1248793/101‑1 (MQ=255) cTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATaa > 2:1023568/1‑101 (MQ=255) cGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGcc > 1:678367/1‑101 (MQ=255) cGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGcc > 2:381305/1‑101 (MQ=255) gAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCg > 1:1672540/1‑101 (MQ=255) gAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCg > 2:308692/1‑101 (MQ=255) aGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGa > 2:1404642/1‑101 (MQ=255) aTTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAAcc > 1:1065987/1‑101 (MQ=255) aTTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAAcc > 1:1330002/1‑101 (MQ=255) tCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGCTAAGCCGGACCGAt > 2:668250/1‑101 (MQ=255) tCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGAt < 2:1422787/101‑1 (MQ=255) tGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCg > 1:254444/1‑101 (MQ=255) tGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCg > 1:1103290/1‑101 (MQ=255) aGTTCATGGTAAAACCGCGTGGACCCCCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGc < 2:724706/101‑1 (MQ=255) aGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGAt > 2:1306056/1‑101 (MQ=255) gggTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATa < 2:1449108/101‑1 (MQ=255) ggTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATAc < 1:515230/101‑1 (MQ=255) aaaaCCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGtt < 1:1023573/101‑1 (MQ=255) aaaaCCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAACTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGtt > 2:948663/1‑101 (MQ=255) aaaCCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTc < 2:1415426/101‑1 (MQ=255) aaaCCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTc > 1:1719007/1‑101 (MQ=255) aaCCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCt < 1:1246309/101‑1 (MQ=255) aaCCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCt < 1:400296/101‑1 (MQ=255) aaCCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCt < 2:1346287/101‑1 (MQ=255) aCCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTg < 2:716349/101‑1 (MQ=255) ccGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGc < 2:1051526/101‑1 (MQ=255) cgcgTGGAACACCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCg > 2:1468708/1‑101 (MQ=255) cacCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCa < 2:1071645/101‑1 (MQ=255) acCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCAc > 1:912108/1‑101 (MQ=255) acCTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCAc < 2:39098/101‑1 (MQ=255) acCTTCTGCCAGATTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCTGAACCGATTTCGTGCTTGCTACGTTGTGCgcagacttgcc > 2:840158/1‑91 (MQ=255) cTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCg < 1:1498544/101‑1 (MQ=255) cTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCg < 1:866759/101‑1 (MQ=255) cTTCTGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCg > 1:911584/1‑101 (MQ=255) tGCCAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCa < 1:501225/101‑1 (MQ=255) ccAGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCaga > 2:819205/1‑101 (MQ=255) aGGTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAgaga > 1:1014637/1‑101 (MQ=255) ggTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTTCGGTGGCTTCACCGATCAGAGaa > 1:255637/1‑101 (MQ=255) ggTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGaa > 1:1166874/1‑101 (MQ=255) ggTTACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGaa > 2:983368/1‑101 (MQ=255) ttACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAAcc < 1:899440/101‑1 (MQ=255) ttACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAAcc < 1:181802/101‑1 (MQ=255) ttACGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAAcc < 1:624137/101‑1 (MQ=255) cGGCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAACCGTa < 2:371248/101‑1 (MQ=255) gCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAACCGTAAt < 2:1329996/101‑1 (MQ=255) gCCACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAACCGTAAt < 1:1428403/101‑1 (MQ=255) ccACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAACCGTAAtt > 1:1691241/1‑101 (MQ=255) ccACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAACCGTAAtt < 2:592906/101‑1 (MQ=255) cACGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAACCGTAATTa > 2:1436645/1‑101 (MQ=255) cGAGCTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAACCGTAATTacg > 1:979103/1‑101 (MQ=255) | ACAATACCGGTCAGCGGTTCCTGCAGTGCTTCGAGGATTTCATTGGAGTTCAGGGTAAAACCGCGTGGAACACCTTCTGCCAGGTTACGGCCACGAACTTCGATTTCACGGACTTCATCGCCCGGATAAGCCGAACCGATTTCGTGCTTGATACGTTCTGCGGTGGCTTCACCGATCAGAGAACCGTAATTACG > REL606/3328176‑3328369 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |