Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 3,287,483 | T→C | M260V (ATG→GTG) | arcB ← | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,287,483 | 0 | T | C | 98.0% | 186.5 / ‑3.7 | 49 | M260V (ATG→GTG) | arcB | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (13/35); total (14/35) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.86e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.32e-01 |
GTGACTGATGGTGGAAATAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATCCAGCCACTGCTCATAG > REL606/3287385‑3287580 | gTGACTGATGGTGGAAATAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCccacca > 1:850603/1‑101 (MQ=255) cTGATGGTGGAAATAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAAcc < 2:532315/101‑1 (MQ=255) gATGGTGGAAATAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGt < 1:87840/101‑1 (MQ=255) ggtggAAATAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGAc < 2:1509297/101‑1 (MQ=255) tggAAATAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGt > 1:129267/1‑101 (MQ=255) aaaTAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTa < 1:236394/101‑1 (MQ=255) aaaTAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTa < 1:838604/101‑1 (MQ=255) aaaTAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTa > 2:1158702/1‑101 (MQ=255) aaaTAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTa < 2:1402817/101‑1 (MQ=255) aaTAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTAc < 1:184187/101‑1 (MQ=255) aaaCGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTAcccc > 1:1493017/1‑100 (MQ=255) aCGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCAcg < 1:332570/101‑1 (MQ=255) gTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCgtagt < 1:122463/101‑1 (MQ=255) cgcgGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTAc > 1:1156661/1‑101 (MQ=255) gcgGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACg < 2:284383/101‑1 (MQ=255) gcgGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACg < 2:1455029/101‑1 (MQ=255) cgGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACgg < 1:168958/101‑1 (MQ=255) ggCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGc > 1:1309259/1‑101 (MQ=255) gCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCa < 1:905628/101‑1 (MQ=255) gcgcGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACttt < 1:583356/101‑1 (MQ=255) gcgTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTAc < 1:1382550/101‑1 (MQ=255) gTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACaa < 1:117696/101‑1 (MQ=255) cgcATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCaa < 1:1084604/101‑1 (MQ=255) cgcATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCaa < 1:1591900/101‑1 (MQ=255) gcATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCaaa < 1:1710726/101‑1 (MQ=255) cATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAg < 2:558680/101‑1 (MQ=255) cATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAg < 1:1186263/101‑1 (MQ=255) tCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCa < 1:893841/101‑1 (MQ=255) ccTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAg < 1:506817/101‑1 (MQ=255) cTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAgg < 1:1007416/101‑1 (MQ=255) cTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAgg < 2:1381688/101‑1 (MQ=255) cTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAgg < 1:64332/101‑1 (MQ=255) gATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCt < 1:1130134/101‑1 (MQ=255) aTACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCtt > 2:1230350/1‑101 (MQ=255) tACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCttt < 1:581658/101‑1 (MQ=255) tACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCttt < 1:643769/101‑1 (MQ=255) aCCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCCCCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTg < 2:108818/101‑1 (MQ=255) attcTTACGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGc > 2:1212988/4‑101 (MQ=255) cTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGcgtc > 1:755267/1‑101 (MQ=255) aCGCTCGGTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGcgtccgt < 2:814945/101‑1 (MQ=255) ggTAATGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGAt > 1:396408/1‑101 (MQ=255) aaTGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAAt > 1:1450607/1‑101 (MQ=255) tGTCGCGACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATcc > 1:383500/1‑101 (MQ=255) cgcgACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATCCAGc < 1:1222288/101‑1 (MQ=255) gACCAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATCCAGCCAc > 2:1408381/1‑101 (MQ=255) ccAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATCCAGCCACTg < 1:545859/101‑1 (MQ=255) cAAAGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATCCAGCCACTGc > 1:1003557/1‑101 (MQ=255) aaaGCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATCCAGCCACTGCt > 2:1004405/1‑101 (MQ=255) gCCCACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATCCAGCCACTGCTCAt < 2:1079793/101‑1 (MQ=255) cccACCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATCCAGCCACTGCTCATa < 1:616637/101‑1 (MQ=255) ccaccaAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATCCAGCCACTGCTCATAg < 1:1007218/101‑1 (MQ=255) | GTGACTGATGGTGGAAATAAACGTCGTTTTGTCGCGGCTGGCGCGTTCAAGCGCATCCTGATACCGCTTACGCTCGGTAATGTCGCGACCAAAGCCCATCAAACCGTGACGTTTACCCACGCGGTCGTAGTACGGCACTTTACAAATTTCAAAGCAGGCTTTGCGTCCGTCGGGATAATCCAGCCACTGCTCATAG > REL606/3287385‑3287580 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |