Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 3,067,926 | G→A | A40V (GCA→GTA) | yghS ← | predicted protein with nucleoside triphosphate hydrolase domain |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,067,926 | 0 | G | A | 98.7% | 272.0 / ‑3.9 | 74 | A40V (GCA→GTA) | yghS | predicted protein with nucleoside triphosphate hydrolase domain |
Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (36/37); total (37/37) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.96e-01 |
AACGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGAATTAATTAT > REL606/3067828‑3068023 | aaCGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTtact < 2:1495681/101‑1 (MQ=255) aaCGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTtact > 1:1707943/1‑101 (MQ=255) cccAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCa > 2:1623456/1‑101 (MQ=255) cAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGt > 2:1250058/1‑101 (MQ=255) cAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGt < 1:1350667/101‑1 (MQ=255) aGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCAt < 2:510611/101‑1 (MQ=255) gTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCAttt < 2:1302407/101‑1 (MQ=255) cgcCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTAcc < 2:1295401/101‑1 (MQ=255) cAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAgg < 1:907338/101‑1 (MQ=255) aaTAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGc > 1:943828/1‑101 (MQ=255) tAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCtt < 2:456737/101‑1 (MQ=255) tAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCtt > 2:68350/1‑101 (MQ=255) aaCAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTg < 1:1523238/101‑1 (MQ=255) cAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGcc > 1:792793/1‑101 (MQ=255) cAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGcc > 1:1388274/1‑101 (MQ=255) aGGGAGCTGTGAAATCCATTCGCCTATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCg < 1:1636679/101‑1 (MQ=255) aGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCg < 2:639306/101‑1 (MQ=255) aGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCg > 1:1348534/1‑101 (MQ=255) aGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAg < 2:1374667/101‑1 (MQ=255) aGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAg > 2:589560/1‑101 (MQ=255) gCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAgg < 1:1383079/101‑1 (MQ=255) tgtgAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGt < 2:1152451/101‑1 (MQ=255) gtgAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTc > 1:1625103/1‑101 (MQ=255) gtgAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTc < 2:547729/101‑1 (MQ=255) gtgAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTc > 1:1083304/1‑101 (MQ=255) aaTCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGAtt < 1:706073/101‑1 (MQ=255) aTCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGAttt < 1:1228967/101‑1 (MQ=255) aTCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGAttt < 1:187694/101‑1 (MQ=255) tCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTa > 2:189227/1‑101 (MQ=255) cATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTAcc > 2:356960/1‑101 (MQ=255) aTTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCt > 2:698782/1‑101 (MQ=255) aTTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCt > 1:299221/1‑101 (MQ=255) cGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGaa > 1:526846/1‑101 (MQ=255) gCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAAc < 2:1087744/101‑1 (MQ=255) ccAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAAcc > 2:1716900/1‑101 (MQ=255) cAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCa > 1:242470/1‑101 (MQ=255) aaTTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCAt > 2:1276353/1‑101 (MQ=255) cGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATcaca < 2:299221/101‑1 (MQ=255) gCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACAt < 2:413196/101‑1 (MQ=255) gCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACAt > 2:593649/1‑101 (MQ=255) gCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACAt < 2:1610550/101‑1 (MQ=255) ccGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATcc < 2:1625097/101‑1 (MQ=255) cGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCt > 1:1133698/1‑101 (MQ=255) cGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCt > 2:638127/1‑101 (MQ=255) cGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCt > 1:1293820/1‑101 (MQ=255) ggACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTa > 1:539795/1‑101 (MQ=255) ggACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTa > 2:698447/1‑101 (MQ=255) aCGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACa < 2:1707937/101‑1 (MQ=255) aTTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATg > 2:1065627/1‑101 (MQ=255) ttGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATgg < 1:918737/101‑1 (MQ=255) tGCCCGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGc < 2:745011/101‑1 (MQ=255) cccGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCaa < 2:719073/101‑1 (MQ=255) ccGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAAt > 2:1182540/1‑101 (MQ=255) cGAGATAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATa > 2:1639507/1‑101 (MQ=255) gagaTAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATaa < 1:103386/101‑1 (MQ=255) gagaTAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATaa < 2:1433111/101‑1 (MQ=255) aTAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAacac < 1:1049682/101‑1 (MQ=255) aTAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAacac > 2:1274769/1‑101 (MQ=255) tAAATGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACg < 1:622762/101‑1 (MQ=255) aTGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCAc > 1:209461/1‑101 (MQ=255) aTGTGTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCAc < 1:935080/101‑1 (MQ=255) tgtgTTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACt > 2:392019/1‑101 (MQ=255) gtgtTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTg > 2:16197/1‑101 (MQ=255) tgtTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTgg < 2:1133693/101‑1 (MQ=255) tgtTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTgg > 2:1450955/1‑101 (MQ=255) tgtTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTgg > 2:1583891/1‑101 (MQ=255) gtTCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGc < 1:602706/101‑1 (MQ=255) ttCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCg < 2:588219/101‑1 (MQ=255) tCTGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGt > 2:226804/1‑101 (MQ=255) tGTTGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTgg > 1:311878/1‑101 (MQ=255) ttGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGaa < 1:1513267/101‑1 (MQ=255) ttGGCATTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGaa > 1:1375927/1‑101 (MQ=255) tgCATTCTTACTGCCAGTTCATTTACCAGGGTTGCCGTGAGGGTCGATTTACCTGAACCATCACCTCCTACAATGGCAATAACACGCACTGGCGTGGaatt < 1:778898/100‑1 (MQ=255) aTTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGaattaat < 1:1345756/101‑1 (MQ=255) aTTCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGaattaat < 1:1065632/101‑1 (MQ=255) ttCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGaattaatt < 1:1380145/101‑1 (MQ=255) tCTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGAattaatta < 1:1148982/101‑1 (MQ=255) cTTACTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGAATTAattat > 1:810743/1‑101 (MQ=255) | AACGCCCAAAAGGTGCGCCAATAACAGGGAGCTGTGAAATCCATTCGCCAATTCGCCCGGACGATTGCCCGAGATAAATGTGTTCTGTTGGCATTCTTGCTGCCAGTTCATTTACCAGGCTTGCCGTGAGGGTCGATTTACCTGAACCATCACATCCTACAATGGCAATAACACGCACTGGCGTGGAATTAATTAT > REL606/3067828‑3068023 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |