Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 2,268,951 | T→G | I129S (ATC→AGC) | atoC → | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 2,268,951 | 0 | T | G | 98.2% | 216.0 / ‑4.2 | 56 | I129S (ATC→AGC) | atoC | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein |
Reads supporting (aligned to +/- strand): ref base T (1/0); new base G (26/29); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.82e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01 |
CGGAGCCTTCGACTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAGACACCGCCAAA > REL606/2268856‑2269048 | cGGAGCGTTTGACTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTc < 2:1323111/101‑1 (MQ=255) gAGCCTTCGACTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCAt > 2:1017208/1‑101 (MQ=255) aGCCTTCGACTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATc > 1:1369361/1‑101 (MQ=255) gCCTTCGATTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCt < 1:1626985/101‑1 (MQ=255) cTTCGACTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGc > 2:333795/1‑101 (MQ=255) tCGACTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCAc < 2:1563165/101‑1 (MQ=255) cGACTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCAcc < 1:1024997/101‑1 (MQ=255) cGACTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCAcc < 1:698427/101‑1 (MQ=255) gACTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCa > 1:1408067/1‑101 (MQ=255) tGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCAc < 1:669066/101‑1 (MQ=255) ttattaAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTCATCTGCACCAGGCACTg > 1:1567609/1‑101 (MQ=255) ttattaAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTg > 2:1340213/1‑101 (MQ=255) ttattaAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTg > 1:1163038/1‑101 (MQ=255) ttattaAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTg > 2:912026/1‑101 (MQ=255) atccGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCAcc < 1:1042619/99‑1 (MQ=255) aCCGTTTGATCTCGTAGACTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGCGCACCa > 2:1589851/1‑101 (MQ=255) ccGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAg < 2:1269768/101‑1 (MQ=255) tGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGc > 2:20295/1‑101 (MQ=255) gATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCa < 2:910516/101‑1 (MQ=255) tctcGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAAt < 1:20295/101‑1 (MQ=255) ctcGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATg < 2:60096/101‑1 (MQ=255) ctcGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATg < 2:532489/101‑1 (MQ=255) ctcGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATg > 2:1330624/1‑101 (MQ=255) tcGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATgg < 1:751011/101‑1 (MQ=255) cGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATggg < 1:1401039/101‑1 (MQ=255) cGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATggg > 1:121042/1‑101 (MQ=255) gATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATgggg > 2:655793/1‑101 (MQ=255) aTGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATggggg < 1:985696/101‑1 (MQ=255) tGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGc < 2:509430/101‑1 (MQ=255) tGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGc < 2:1369355/101‑1 (MQ=255) gAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATTGGGGca > 2:1410648/1‑101 (MQ=255) gAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGca < 1:1428690/101‑1 (MQ=255) gAGTTAAATTTAATCGTTCAGCGCGCTTTACAACTCCAGACAATGAAAAAAAAGAGCCGTCATCTGCACTAGGCACTGAGGACCAGCTGGCAATGGGGGca > 2:1066582/1‑101 (MQ=255) aGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGcac > 1:1342080/1‑101 (MQ=255) gTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGAACCAGGCACTGAGCACCAGCTGGCAATGGGGGcaca > 2:1428617/1‑101 (MQ=255) ttGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACAt > 2:646550/1‑101 (MQ=255) aTTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATtctc < 1:1020107/101‑1 (MQ=255) tttAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCa < 2:666744/101‑1 (MQ=255) tttAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCa < 2:803780/101‑1 (MQ=255) aaTCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCa > 2:656304/1‑101 (MQ=255) aTCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCaa > 2:909952/1‑101 (MQ=255) tCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAAc > 2:362126/1‑101 (MQ=255) tCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAAc > 1:1324398/1‑101 (MQ=255) gTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAg > 1:756032/1‑101 (MQ=255) cgcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCga > 1:360547/1‑101 (MQ=255) gcTTTACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCgat > 2:1321743/1‑101 (MQ=255) ttACACCTCCAGTCACTCAAAAAAGAGAGCCGTCATCTGCACCAGGCCCTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCgatgat < 2:39656/101‑1 (MQ=255) ttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCgatgat < 1:935373/101‑1 (MQ=255) ttACAACTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCgatgat < 2:353008/101‑1 (MQ=255) cTCCAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACAt < 2:420044/101‑1 (MQ=255) ccAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCt < 2:1163033/101‑1 (MQ=255) cAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTg < 2:337534/101‑1 (MQ=255) cAGTCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTg < 1:1620202/101‑1 (MQ=255) tCAATGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCaa > 1:1196831/1‑101 (MQ=255) aaTGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAg < 1:267993/101‑1 (MQ=255) aTGAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAGa > 2:1147050/1‑101 (MQ=255) agAAAAAAGAGAGCCGTCATCTGCACCAGGCTCTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAGac < 2:505382/100‑1 (MQ=255) gAAAAAAGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCGCCAACAGCCCGGCGATGATGGACATCTGCAAAGaca < 2:1521585/101‑1 (MQ=255) aaaaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATCGACATCTGCAAAGacac > 2:1313278/1‑101 (MQ=255) aaaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAGACAcc > 1:1475707/1‑101 (MQ=255) aaaaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAGACAcc < 1:413819/101‑1 (MQ=255) aaaGAGAGCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAGACACCGc > 2:55751/1‑101 (MQ=255) agagagCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAGACACCGCCa > 2:1550611/1‑101 (MQ=255) agagagCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAGACACCGCCa > 2:1608286/1‑101 (MQ=255) agagCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAGACACCGCCaaa > 2:687324/1‑101 (MQ=255) | CGGAGCCTTCGACTATGTTATTAAACCGTTTGATCTCGATGAGTTGAATTTAATCGTTCAGCGCGCTTTACAACTCCAGTCAATGAAAAAAGAGATCCGTCATCTGCACCAGGCACTGAGCACCAGCTGGCAATGGGGGCACATTCTCACCAACAGCCCGGCGATGATGGACATCTGCAAAGACACCGCCAAA > REL606/2268856‑2269048 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |