Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 1,166,129 | T→C | intergenic (+156/‑55) | fabG → / → acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 1,166,129 | 0 | T | C | 95.0% | 293.6 / 1.5 | 80 | intergenic (+156/‑55) | fabG/acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein |
Reads supporting (aligned to +/- strand): ref base T (3/1); new base C (40/36); total (43/37) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.20e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.69e-01 |
TTAGTGCAAAATGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACA > REL606/1166031‑1166227 | ttAGTGCAAAATGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACAtctt < 1:1417471/101‑1 (MQ=255) ttAGTGCAAAATGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACAtctt < 1:222965/101‑1 (MQ=255) tGCAAAATGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATac > 1:948428/1‑101 (MQ=255) gCAAAATGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATaca > 1:234232/1‑101 (MQ=255) cAAAATGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATacac > 2:1182273/1‑101 (MQ=255) aaaaTGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACt > 1:1122835/1‑101 (MQ=255) aaaTGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTa > 2:986554/1‑101 (MQ=255) aaaTGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTa < 2:1574003/101‑1 (MQ=255) tGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGa > 2:1561742/1‑101 (MQ=255) tGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGa > 2:1106193/1‑101 (MQ=255) tGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGa > 2:1479469/1‑101 (MQ=255) tttGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGaaaa > 2:339291/1‑101 (MQ=255) tGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAAcc > 2:892555/1‑101 (MQ=255) cGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCAt > 1:1206248/1‑101 (MQ=255) cGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCAt > 1:1492164/1‑101 (MQ=255) gTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATc < 2:1037204/101‑1 (MQ=255) gTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATc < 2:1371846/101‑1 (MQ=255) tATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcgc > 2:779793/1‑101 (MQ=255) tATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcgc < 2:423674/101‑1 (MQ=255) aTTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcgcg < 1:365367/101‑1 (MQ=255) aTTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATcgcg > 1:1242829/1‑101 (MQ=255) ttGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGa > 1:640378/1‑101 (MQ=255) gggggTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAg > 2:1140919/1‑101 (MQ=255) ggggTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGc > 2:371338/1‑101 (MQ=255) gggTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCg > 2:722751/1‑101 (MQ=255) gTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCggg > 1:1090825/1‑99 (MQ=255) gTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAg > 2:1643636/1‑101 (MQ=255) gTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAg < 2:985407/101‑1 (MQ=255) aaGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtt > 1:983272/1‑101 (MQ=255) aGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCTTGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAACGCCCGttt < 2:1709620/101‑1 (MQ=255) ggCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGtttt < 1:1643642/101‑1 (MQ=255) gCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTg < 2:148584/101‑1 (MQ=255) cTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGAt > 1:526392/1‑101 (MQ=255) cTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGAt > 1:663364/1‑101 (MQ=255) cTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGAt < 2:805641/101‑1 (MQ=255) tCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATa > 1:1054635/1‑101 (MQ=255) tCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATa < 2:1276474/101‑1 (MQ=255) aaaaTAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAgg > 2:64651/1‑101 (MQ=255) aaaTAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGa < 1:318450/101‑1 (MQ=255) aaTAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGaa > 2:169339/1‑101 (MQ=255) aTAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGaaa < 1:328302/101‑1 (MQ=255) tAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAAt < 2:1570036/101‑1 (MQ=255) aaCGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAAtt < 2:79453/101‑1 (MQ=255) gTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTaa < 1:1269369/101‑1 (MQ=255) aaaaTCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAaga < 1:180255/101‑1 (MQ=255) aaTCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGt > 2:1414772/1‑101 (MQ=255) tCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTAt < 2:666794/101‑1 (MQ=255) cGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATg < 1:804777/101‑1 (MQ=255) tGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAg > 2:710866/1‑101 (MQ=255) gTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCa < 1:339291/101‑1 (MQ=255) gccTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATc < 2:983267/100‑1 (MQ=255) aCCTGCCGGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATc > 2:718186/1‑101 (MQ=255) aCCTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATc < 1:987872/101‑1 (MQ=255) ccTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCg < 1:1561748/101‑1 (MQ=255) cTGCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCga > 1:1419414/1‑101 (MQ=255) tGCCGGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGGAAACGATCGCGAAAACTAGTTTTGATAGGAACTTTAAGAGTATGAGCACTATAgaa > 1:1162295/1‑101 (MQ=255) gCCGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCgaag < 1:1468185/101‑1 (MQ=255) cGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCgaagaa > 2:720576/1‑101 (MQ=255) cGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCgaagaa > 1:1671864/1‑101 (MQ=255) cGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCgaagaa < 1:1230490/101‑1 (MQ=255) cGGGATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGAATGAGCACTATCgaagaa > 2:1591186/1‑101 (MQ=255) gggATTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAAc > 2:1350659/1‑101 (MQ=255) aTTTAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAAcgcg > 1:28867/1‑101 (MQ=255) tttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGt > 2:976302/1‑101 (MQ=255) tttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGt < 1:1140924/101‑1 (MQ=255) ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGtt < 1:986559/101‑1 (MQ=255) ttAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGtt < 2:228948/101‑1 (MQ=255) tAGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTa < 2:1054630/101‑1 (MQ=255) aGTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTaa > 1:442441/1‑101 (MQ=255) gTTGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAg > 1:1122269/1‑101 (MQ=255) ttGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGa > 1:1580056/1‑101 (MQ=255) tGCAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGaa > 1:961128/1‑101 (MQ=255) cAAATTTTTCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGaaaa < 2:1472230/101‑1 (MQ=255) tttttCAACATCTTATACACTCCGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAAAGTAAGAGCACTATCGAAGAACGCGTTAAGAAAATTAt < 2:1134084/101‑1 (MQ=255) tttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTAt < 1:1513932/101‑1 (MQ=255) ttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTATc < 1:371338/101‑1 (MQ=255) ttttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTATc < 2:1719509/101‑1 (MQ=255) tttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTATCg < 2:459449/101‑1 (MQ=255) ttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTATCgg > 2:699676/1‑101 (MQ=255) ttCAACATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTATCgg < 1:1180668/101‑1 (MQ=255) cATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAAc < 2:1122830/101‑1 (MQ=255) cATCTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAAc < 1:169339/101‑1 (MQ=255) aTTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACa > 1:276563/1‑101 (MQ=255) | TTAGTGCAAAATGATTTGCGTTATTGGGGGGTAAGGCCTCAAAATAACGTAAAATCGTGGTAAGACCTGCCGGGATTTAGTTGCAAATTTTTCAACATTTTATACACTACGAAAACCATCGCGAAAGCGAGTTTTGATAGGAAATTTAAGAGTATGAGCACTATCGAAGAACGCGTTAAGAAAATTATCGGCGAACA > REL606/1166031‑1166227 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |