Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | REL606 | 1,162,594 | A→G | P135P (CCA→CCG) | plsX → | fatty acid/phospholipid synthesis protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 1,162,594 | 0 | A | G | 96.7% | 217.4 / ‑1.2 | 60 | P135P (CCA→CCG) | plsX | fatty acid/phospholipid synthesis protein |
Reads supporting (aligned to +/- strand): ref base A (2/0); new base G (30/28); total (32/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.94e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.45e-01 |
AGTGCCGGTAATACCGGGGCACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCATTATGGGCTCAGTT > REL606/1162499‑1162690 | aGTGCCGGTAATACCGGGGCACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCa < 1:1258999/101‑1 (MQ=255) gTGCCGGTAATACCGGGGCACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAg > 2:1608259/1‑101 (MQ=255) tccGGTAATACCGGGGCACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCa < 1:707222/100‑1 (MQ=255) ggTAATACCGGGGCACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCaaaa > 2:99493/1‑101 (MQ=255) gTAATACCGGGGCACTGATGGGGCTGGCAAAATTACTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCGTCAGCAAAAg < 2:1090143/101‑1 (MQ=255) tACCGGGGCACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCa < 1:1617097/101‑1 (MQ=255) tACCGGGGCACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCACATCAGCAAAAGGGCa > 2:128386/1‑101 (MQ=255) aCCGGGGCACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCaa < 1:1545884/101‑1 (MQ=255) cGGGGCACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCaaaa < 1:1066339/101‑1 (MQ=255) cACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACggtg > 2:643324/1‑101 (MQ=255) aCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACggtgg > 1:1003944/1‑101 (MQ=255) aCTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACggtgg < 1:844760/101‑1 (MQ=255) aTGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCt > 1:236700/1‑101 (MQ=255) gggCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGa > 1:1006846/1‑101 (MQ=255) gggCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGa < 2:524554/101‑1 (MQ=255) gCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACt < 2:697481/101‑1 (MQ=255) cTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACtt < 1:274640/101‑1 (MQ=255) cTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACtt > 2:1201933/1‑101 (MQ=255) cTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACtt > 2:453163/1‑101 (MQ=255) tGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTa > 2:1574812/1‑101 (MQ=255) gCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAgg < 1:848304/101‑1 (MQ=255) cAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAggg < 1:1473687/101‑1 (MQ=255) aaaTTATTACTCAAGCCCGTGGAGGGGATTGTGCGTCCTGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTGCCTGACTTAGGGGc < 2:268032/101‑1 (MQ=255) aaaTTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGc > 2:1247354/1‑101 (MQ=255) aaaTTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGc > 1:1381111/1‑101 (MQ=255) aaTTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGcc > 1:720167/1‑101 (MQ=255) tattaCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAAc < 1:1311015/101‑1 (MQ=255) attaCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACg > 1:1542206/1‑101 (MQ=255) taCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTc < 1:183532/101‑1 (MQ=255) tcTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCg < 2:572490/100‑1 (MQ=255) aCTCAAGCCCCTGGAGGGGGTTGAGCGGCCGGCGCTGGGGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCg > 2:1689714/1‑101 (MQ=255) aCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCg < 1:655504/101‑1 (MQ=255) aCTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCg < 2:1377905/101‑1 (MQ=255) cTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGa > 2:94009/1‑101 (MQ=255) cAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGAtt < 1:1608265/101‑1 (MQ=255) aaGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATtg > 1:402191/1‑101 (MQ=255) ccccTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGCCCTTGACTTCGGGGCCAACGTCGATTGTGa > 2:1675568/1‑101 (MQ=255) cccTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGAc > 2:1270174/1‑101 (MQ=255) ccTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACa < 2:364379/101‑1 (MQ=255) ccTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACa > 1:1652763/1‑101 (MQ=255) ccTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACa > 2:1504156/1‑101 (MQ=255) ccTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACa < 1:1045454/101‑1 (MQ=255) tGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGt > 1:1013651/1‑101 (MQ=255) gAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTAc < 2:1652757/101‑1 (MQ=255) aGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACa < 2:1574783/101‑1 (MQ=255) aGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACa > 2:491321/1‑101 (MQ=255) ggATTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATg > 1:818826/1‑101 (MQ=255) aTTGAGCGTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGCGACAGAACAATGtt > 2:1142438/1‑101 (MQ=255) tGAGCGTCCGGCGCTGGTGACGGTATTACCGCATGAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTgg > 1:1701103/1‑101 (MQ=255) gTCCGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCaa > 1:1214713/1‑101 (MQ=255) cGGCGCTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAAttt < 2:1461312/101‑1 (MQ=255) gcgcTGGTGACGCTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGc < 1:608624/101‑1 (MQ=255) cTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCAt > 1:1094325/1‑101 (MQ=255) cTGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCAt < 1:453168/101‑1 (MQ=255) tGGTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCAtt < 2:1330612/101‑1 (MQ=255) gTGACGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCATTAt < 2:1003939/101‑1 (MQ=255) gTGACGGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCATTAt > 2:1660518/1‑101 (MQ=255) aCGGTATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCATTATggg > 1:997594/1‑101 (MQ=255) tATTACCGCATCATCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGGCGATTGTGACAGTACAATGTTGGTGCAATTTGCCATTATGGGCTCa < 1:1403909/101‑1 (MQ=255) tATTACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCATTATGGGCTCa > 1:567664/1‑101 (MQ=255) tACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCATTATGGGCTCAGtt > 1:1547691/1‑101 (MQ=255) tACCGCATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCATTATGGGCTCAGtt > 2:1068913/1‑101 (MQ=255) | AGTGCCGGTAATACCGGGGCACTGATGGGGCTGGCAAAATTATTACTCAAGCCCCTGGAGGGGATTGAGCGTCCGGCGCTGGTGACGGTATTACCACATCAGCAAAAGGGCAAAACGGTGGTCCTTGACTTAGGGGCCAACGTCGATTGTGACAGTACAATGTTGGTGCAATTTGCCATTATGGGCTCAGTT > REL606/1162499‑1162690 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |