Predicted mutation
evidence seq id position mutation annotation gene description
RA REL606 943,554 A→C intergenic (‑53/+232) infA ← / ← aat translation initiation factor IF‑1/leucyl/phenylalanyl‑tRNA‑protein transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL606943,5540AC100.0% 250.3 / NA 63intergenic (‑53/+232)infA/aattranslation initiation factor IF‑1/leucyl/phenylalanyl‑tRNA‑protein transferase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (38/25);  total (38/25)

TTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCG  >  REL606/943456‑943648
                                                                                                  |                                                                                              
tttCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGt                                                                                              >  1:166845/1‑101 (MQ=255)
 ttCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGtt                                                                                             <  2:1142925/101‑1 (MQ=255)
  tCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTc                                                                                            <  1:1071024/101‑1 (MQ=255)
   cAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCt                                                                                           >  2:765920/1‑101 (MQ=255)
    aaGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTg                                                                                          >  2:1397730/1‑101 (MQ=255)
      gAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTa                                                                                        >  1:1331391/1‑101 (MQ=255)
         cGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAAt                                                                                     <  1:562911/101‑1 (MQ=255)
          ggTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCAACGTTCTGTAAATa                                                                                    <  2:252244/101‑1 (MQ=255)
           ctACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATaa                                                                                   <  2:1131625/100‑1 (MQ=255)
             aCCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATaaag                                                                                 >  1:1131630/1‑99 (MQ=255)
                     tttCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAttt                                                                         >  2:971561/1‑101 (MQ=255)
                     tttCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGAttt                                                                         >  1:792969/1‑101 (MQ=255)
                      ttCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTg                                                                        >  2:641943/1‑101 (MQ=255)
                      ttCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTg                                                                        >  1:1075630/1‑101 (MQ=255)
                        cAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcg                                                                      <  2:1542695/101‑1 (MQ=255)
                          atatTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTgcgcg                                                                    <  1:1301469/101‑1 (MQ=255)
                            atTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCt                                                                  >  2:789612/1‑101 (MQ=255)
                             ttGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTa                                                                 >  1:467823/1‑101 (MQ=255)
                              tGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTaa                                                                >  2:1086239/1‑101 (MQ=255)
                               gTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTaaa                                                               >  1:278394/1‑101 (MQ=255)
                               gTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTaaa                                                               >  1:1149890/1‑101 (MQ=255)
                                tcttcgTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAAt                                                              >  1:1423482/1‑101 (MQ=255)
                                 cttcttTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATc                                                             >  1:1679055/1‑101 (MQ=255)
                                  ttcttTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCg                                                            >  2:998378/1‑101 (MQ=255)
                                    cttTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGca                                                          >  1:1288464/1‑101 (MQ=255)
                                     tttGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaa                                                         <  2:1661034/101‑1 (MQ=255)
                                        ggCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGcaacaa                                                      >  2:721250/1‑101 (MQ=255)
                                           cATCTAATCCGCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCaacaaaca                                                   <  1:296251/101‑1 (MQ=255)
                                            aTCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAg                                                  >  1:298850/1‑101 (MQ=255)
                                            aTCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAg                                                  >  2:1226194/1‑101 (MQ=255)
                                               tAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGtt                                               >  2:415833/1‑101 (MQ=255)
                                               tAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGtt                                               >  1:372739/1‑101 (MQ=255)
                                                 aTCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCg                                             >  1:77405/1‑101 (MQ=255)
                                                 aTCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCg                                             <  2:166845/101‑1 (MQ=255)
                                                 aTCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCg                                             >  2:624761/1‑101 (MQ=255)
                                                   ccTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCgtc                                           <  1:1439343/101‑3 (MQ=255)
                                                   ccTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGc                                           <  1:1439344/101‑1 (MQ=255)
                                                   ccTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGc                                           >  1:1515048/1‑101 (MQ=255)
                                                     tctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATGAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGcac                                         <  1:1413514/101‑1 (MQ=255)
                                                     tctGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGcac                                         <  2:1326150/101‑1 (MQ=255)
                                                       tGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACAt                                       <  1:1621066/101‑1 (MQ=255)
                                                       tGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACAt                                       <  2:834313/101‑1 (MQ=255)
                                                        ggggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACAtt                                      <  2:582195/101‑1 (MQ=255)
                                                        ggggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACAtt                                      >  1:51961/1‑101 (MQ=255)
                                                         gggTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTa                                     <  2:467818/101‑1 (MQ=255)
                                                           gTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACt                                   >  1:627123/1‑101 (MQ=255)
                                                            tATCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTc                                  >  2:68220/1‑101 (MQ=255)
                                                             aTCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTcc                                 >  1:1234883/1‑101 (MQ=255)
                                                              tCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCg                                <  1:1086244/101‑1 (MQ=255)
                                                              tCACTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCg                                <  2:113319/101‑1 (MQ=255)
                                                                aCTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGaa                              >  1:1093741/1‑101 (MQ=255)
                                                                aCTACCGTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGaa                              >  2:1304123/1‑101 (MQ=255)
                                                                      gTAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAacaca                        >  2:1324342/1‑101 (MQ=255)
                                                                       tAATTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAacacac                       <  1:1062299/101‑1 (MQ=255)
                                                                        aaTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACg                      <  1:346207/101‑1 (MQ=255)
                                                                         aTTTGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACgg                     <  1:1226199/101‑1 (MQ=255)
                                                                            tGAACCGGCAAGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTa                  >  2:1660677/1‑101 (MQ=255)
                                                                                     aaGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCAcc         >  1:1658928/1‑101 (MQ=255)
                                                                                      aGATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCa        >  2:186881/1‑101 (MQ=255)
                                                                                       gATAATGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCaa       >  2:510667/1‑101 (MQ=255)
                                                                                          aaTGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAg    >  1:759348/1‑101 (MQ=255)
                                                                                          aaTGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAg    <  1:458375/101‑1 (MQ=255)
                                                                                            tGCCGACGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAgcg  <  1:1282961/101‑1 (MQ=255)
                                                                                                  |                                                                                              
TTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCG  >  REL606/943456‑943648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: