| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | REL606 | 3,894,997 | Δ6,138 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 3893627–3894993 | 3901134 | 6142–7508 | 23 [21] | [1] 90 | [insJ‑5]–[yieO] | [insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 3894996 | NA (NA) | 85 (1.330) | 60/198 | 0.1 | 98.8% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3901135 = | 1 (0.020) | coding (1285/1428 nt) | yieO | predicted multidrug or homocysteine efflux system | |||||
TCTTTTGATCAAATTATTACCATCGGTTGTTTTCAGAAGCATGAACATTGCTGCTGAAGCAACAGTAATAATGCCCATTGTGATAAACGTATAGTGGAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGC > REL606/3901037‑3901234 | agaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaAtt > 2:488306‑M2/99‑101 (MQ=255) aattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGt < 2:346792‑M2/5‑1 (MQ=255) aattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGt > 1:600266‑M2/97‑101 (MQ=255) agcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGa > 2:1187447‑M2/93‑101 (MQ=255) agcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGa > 2:736420‑M2/93‑101 (MQ=255) agcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGa > 1:301335‑M2/93‑101 (MQ=255) gcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGAc < 1:699619‑M2/10‑1 (MQ=255) gcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGAc < 2:1003164‑M2/10‑1 (MQ=255) gcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGAc < 2:808036‑M2/10‑1 (MQ=255) cctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACa > 2:1109948‑M2/91‑101 (MQ=255) cctgaaagtaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACa > 2:1034308‑M2/91‑101 (MQ=255) tgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGt < 2:1304230‑M2/13‑1 (MQ=255) aaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCg > 1:632774‑M2/87‑101 (MQ=255) aaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCg > 2:399474‑M2/87‑101 (MQ=255) ttattaCCATCGGTTGTTTTCAGAAGCATGAACATTGCTGCTGAAGCAACAGTAATAATGCCCATTGTGATAAACGTATAGTGGAATTGTTCGACAGTCGt < 2:1478433/101‑1 (MQ=255) attaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGtt < 1:1534145‑M2/17‑1 (MQ=255) ttaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtg < 1:190908‑M2/18‑1 (MQ=255) taaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgt > 2:717185‑M2/83‑101 (MQ=255) aaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTtgtg > 2:569129‑M2/82‑101 (MQ=255) aaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGcc > 2:166020‑M2/80‑101 (MQ=255) aggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCt < 1:1028992‑M2/23‑1 (MQ=255) gtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTc > 2:1148655‑M2/77‑101 (MQ=255) gtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTc > 2:93322‑M2/77‑101 (MQ=255) tctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTcc < 1:290719‑M2/26‑1 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCAtt > 2:1674478‑M2/73‑101 (MQ=255) ctccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTcc > 1:1052008‑M2/71‑101 (MQ=255) ctccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTcc > 1:1103496‑M2/71‑101 (MQ=255) ccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCtt > 2:1323070‑M2/69‑101 (MQ=255) caattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTc < 2:937002‑M2/34‑1 (MQ=255) caattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTc < 1:867120‑M2/34‑1 (MQ=255) aattgaatatcggaatcagacttatatgccttgtgtttaactgtccaactttttggggtcagttcaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCa < 2:209732‑M2/35‑1 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCa < 1:626945‑M2/35‑1 (MQ=255) aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCa > 1:444800‑M2/67‑101 (MQ=255) ttgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATa < 2:1597333‑M2/37‑1 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCCTaa > 2:1094751‑M2/64‑101 (MQ=255) tgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaa < 1:985260‑M2/38‑1 (MQ=255) gaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATaaa < 2:1510435‑M2/39‑1 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAc < 2:1395850‑M2/40‑1 (MQ=255) aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAAc < 2:1677382‑M2/40‑1 (MQ=255) gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAgg < 1:93322‑M2/47‑1 (MQ=255) gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAgg < 1:25639‑M2/47‑1 (MQ=255) gaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAgg < 2:1416916‑M2/47‑1 (MQ=255) aatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGa > 1:657199‑M2/54‑101 (MQ=255) atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGAc > 1:921628‑M2/53‑101 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACg < 2:1655914‑M2/50‑1 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACg < 2:1391971‑M2/50‑1 (MQ=255) tcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACg < 2:1374987‑M2/50‑1 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGc > 2:350510‑M2/50‑101 (MQ=255) agacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGc < 1:1609563‑M2/52‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGc > 1:57086‑M2/47‑101 (MQ=255) ctatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCa > 2:1296469‑M2/46‑101 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCAc < 1:404915‑M2/57‑1 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACt > 1:192498‑M2/44‑101 (MQ=255) tgcctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTAc > 2:1523984‑M2/41‑101 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAg > 2:714914‑M2/39‑101 (MQ=255) cctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAg > 2:889757‑M2/39‑101 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGc > 2:77600‑M2/38‑101 (MQ=255) ctcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTGGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCGGCACTTACAGc < 2:1085093‑M2/64‑1 (MQ=255) tcgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCa < 1:607679‑M2/65‑1 (MQ=255) cgtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCaa > 1:90559‑M2/36‑101 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAAc < 2:581139‑M2/67‑1 (MQ=255) tttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGcc > 1:1025764‑M2/32‑101 (MQ=255) tttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGcc > 1:553211‑M2/32‑101 (MQ=255) tttaactgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATCCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGcc > 1:1575790‑M2/32‑101 (MQ=255) tgtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACt < 1:872342‑M2/76‑1 (MQ=255) gtccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTg > 1:1541998‑M2/25‑101 (MQ=255) ccaactttttggtgtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGAt < 2:600261‑M2/79‑1 (MQ=255) ccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGAt > 1:716286‑M2/23‑101 (MQ=255) ccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGAt < 2:301335‑M2/79‑1 (MQ=255) ccaactttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGAt < 2:846207‑M2/79‑1 (MQ=255) actttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGa < 2:1103491‑M2/82‑1 (MQ=255) actttttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGa < 2:37943‑M2/82‑1 (MQ=255) ttggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGtt < 1:292743‑M2/87‑1 (MQ=255) ggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTtgc > 2:1205786‑M2/13‑101 (MQ=255) ggggtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCNTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGttgn < 1:1367076‑M2/89‑2 (MQ=255) gtcagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTtgctgc < 2:1213047‑M2/92‑1 (MQ=255) cagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGt > 2:1381046‑M2/8‑101 (MQ=255) cagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGt > 2:401719‑M2/8‑101 (MQ=255) cagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGt > 2:1006187‑M2/8‑101 (MQ=255) cagtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGt < 2:1311520‑M2/94‑1 (MQ=255) agtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTg < 1:993168‑M2/95‑1 (MQ=255) gtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGa > 1:586513‑M2/6‑101 (MQ=255) gtacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGa > 1:1100717‑M2/6‑101 (MQ=255) tacaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGAc < 2:1025759‑M2/97‑1 (MQ=255) acaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGAcc < 1:1523990‑M2/98‑1 (MQ=255) aaaATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGAcc < 1:1035156‑M2/98‑1 (MQ=255) caATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCg < 2:740185‑M2/99‑1 (MQ=255) aATTGTTCGACAGTCGTTGTGCCTTCGATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGc < 2:1688271‑M2/100‑1 (MQ=255) aATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATGGACAGTTGCTGAGTGACCGc > 2:380466‑M2/2‑101 (MQ=255) aATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGc > 1:987054‑M2/2‑101 (MQ=255) | TCTTTTGATCAAATTATTACCATCGGTTGTTTTCAGAAGCATGAACATTGCTGCTGAAGCAACAGTAATAATGCCCATTGTGATAAACGTATAGTGGAATTGTTCGACAGTCGTTGTGCCTTCCATTCCTTCATAAACGCGAAGGACGGCCGCACTTACAGCAACGCCTAAACTGATAGACAGTTGCTGCGTGACCGC > REL606/3901037‑3901234 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |