Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | REL606 | 2,263,508 | Δ3,531 bp | IS1‑mediated | rcsC–[atoS] | rcsC, [atoS] |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 2262806–2263510 | 2267038 | 3529–4233 | 22 [21] | [0] 59 | [insB‑17]–[atoS] | [insB‑17],insA‑17,rcsC,[atoS] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2263507 | NA (NA) | 59 (0.920) | 46/200 | 0.4 | 100% | noncoding (1/768 nt) | IS1 | repeat region |
? | REL606 | 2267039 = | 0 (0.000) | coding (297/1827 nt) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC |
ATCTCTACATCGACTTACCGCGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAG > REL606/2266942‑2267133 | agtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGgc > 2:513310‑M2/98‑101 (MQ=255) agtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGgc > 2:1515627‑M2/98‑101 (MQ=255) tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGgcgc < 1:1608016‑M2/6‑1 (MQ=255) gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTg < 2:985585‑M2/8‑1 (MQ=255) agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTacaa < 1:898780‑M2/18‑1 (MQ=255) agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTacaa > 2:143961‑M2/84‑101 (MQ=255) gggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTacaac > 1:48155‑M2/83‑101 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACaaa > 1:1089688‑M2/80‑101 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAAc < 2:1042205‑M2/24‑1 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAAc < 1:513315‑M2/24‑1 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAAc > 2:560233‑M2/78‑101 (MQ=255) ctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGc < 2:1684777‑M2/26‑1 (MQ=255) tgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCt < 1:1621306‑M2/27‑1 (MQ=255) gaaacagaagccactggagcacctcaaaaaccccatcatacactaaatcagtaagttggccgcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATg < 2:809017‑M2/32‑1 (MQ=255) gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATg > 1:1683114‑M2/70‑101 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGc > 2:1605215‑M2/69‑101 (MQ=255) aacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCg < 1:1213435‑M2/34‑1 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGAt > 2:1209756‑M2/66‑101 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGAt < 1:1488588‑M2/36‑1 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGAt > 2:829017‑M2/66‑101 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGAt < 2:523586‑M2/36‑1 (MQ=255) agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATa < 1:1215916‑M2/37‑1 (MQ=255) agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATa < 1:846776‑M2/37‑1 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAAt > 1:1353892‑M2/63‑101 (MQ=255) aagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAAt < 1:1126051‑M2/39‑1 (MQ=255) gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCa < 1:825426‑M2/41‑1 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCt < 2:1075771‑M2/44‑1 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCt < 1:282208‑M2/44‑1 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCtt > 1:925754‑M2/49‑101 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTc > 1:81732‑M2/48‑101 (MQ=255) ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTc > 1:1513629‑M2/48‑101 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCa < 2:169211‑M2/55‑1 (MQ=255) tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCa < 2:48155‑M2/55‑1 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAg > 1:681567‑M2/46‑101 (MQ=255) caaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAg > 2:426224‑M2/46‑101 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAgcg > 2:1606128‑M2/44‑101 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAgcgc > 2:801796‑M2/43‑101 (MQ=255) aaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAgcgc > 1:442351‑M2/43‑101 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCt > 1:702733‑M2/42‑101 (MQ=255) aacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCt < 1:711670‑M2/60‑1 (MQ=255) acaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCta > 2:6789‑M2/41‑101 (MQ=255) caccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCtat > 2:1560180‑M2/40‑101 (MQ=255) catcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATc < 1:1444718‑M2/65‑1 (MQ=255) atcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCa < 1:1619008‑M2/66‑1 (MQ=255) atacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGaa > 2:663010‑M2/33‑101 (MQ=255) actaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGaataat > 1:899150‑M2/29‑101 (MQ=255) ctaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATg > 1:1211269‑M2/28‑101 (MQ=255) ctaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATg > 1:1095497‑M2/28‑101 (MQ=255) taaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGt < 1:697608‑M2/75‑1 (MQ=255) aaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTc < 1:621170‑M2/76‑1 (MQ=255) atcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCgg > 2:904870‑M2/24‑101 (MQ=255) cagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCg > 2:661334‑M2/22‑101 (MQ=255) taagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTa < 1:214216‑M2/83‑1 (MQ=255) ggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTg < 2:442346‑M2/89‑1 (MQ=255) ggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTg < 1:353938‑M2/89‑1 (MQ=255) cagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGcc < 1:1560186‑M2/91‑1 (MQ=255) agcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCg > 2:1494933‑M2/10‑101 (MQ=255) agcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCg > 2:1308383‑M2/10‑101 (MQ=255) atcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATAGCAGAATAATGTCGGCGTTACCATTGCCGCAg > 2:258118‑M2/7‑101 (MQ=255) | ATCTCTACATCGACTTACCGCGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAG > REL606/2266942‑2267133 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |