Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC	REL606	1,609,175	Δ7,554 bp	between IS3	ybcW–[ECB_01526]	ybcW, gnsB, ynfN, ECB_01516, cspI, ydfP, ydfQ, ydfR, essQ, ECB_01522, ECB_01523, insE‑4, insF‑4, [ECB_01526]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	1607956–1609176	1616669–1615469	6294–8714	22 [21]	[20] 22	insE‑3–[insF‑4]	insE‑3,insF‑3,ybcW,gnsB,ynfN,ECB_01516,cspI,ydfP,ydfQ,ydfR,essQ,ECB_01522,ECB_01523,insE‑4,[insF‑4]

TCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTGGTCTGAATGTTACCCATTC  >  REL606/1616629‑1616770                                          |                                                                                                     tCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCat                                           <  1:834539/101‑1 (MQ=11)   ggTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCatat                                         >  2:1407768/1‑101 (MQ=32)     tGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAg                                       <  2:332797/101‑1 (MQ=35)      ggcggcggcACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGc                                      >  2:257992/1‑101 (MQ=35)          gcggcACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCAtt                                  <  2:1157065/101‑1 (MQ=40)            ggcACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTc                                <  1:457085/101‑1 (MQ=255)              cacaGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCg                              <  1:1158639/101‑1 (MQ=255)                 aGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGAc                           >  1:1694216/1‑101 (MQ=255)                  gTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACa                          >  2:510828/1‑101 (MQ=255)                   ttGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACAt                         <  2:1560901/101‑1 (MQ=255)                     ggTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATAc                       <  2:268546/101‑1 (MQ=255)                     ggTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATAc                       <  1:1614089/101‑1 (MQ=255)                      gtgtGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACt                      >  2:13759/1‑101 (MQ=255)                       tgtgGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTg                     <  1:1300966/101‑1 (MQ=255)                                cTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTGGTCTGAATg            >  2:123580/1‑101 (MQ=255)                                cTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTGGTCTGAATg            >  1:224237/1‑101 (MQ=255)                                       cGGAACGATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTGGTCTGAATGTTACCCa     >  1:471432/1‑101 (MQ=255)                                        ggAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTGGTCTGAATGTTACCCAt    >  1:1166965/1‑101 (MQ=255)                                        ggAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTGGTCTGAATGTTACCCAt    >  1:1579354/1‑101 (MQ=255)                                         gAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTGGTCTGAATGTTACCCAtt   >  2:1324083/1‑101 (MQ=255)                                          aaCAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTGGTCTGAATGTTACCCATTc  >  2:1205485/1‑101 (MQ=255)                                          aaCAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTGGTCTGAATGTTACCCATTc  >  2:53905/1‑101 (MQ=255)                                          |                                                                                                     TCGGTGGCGGCGGCACAGTTGGTGTGGCGGCCTCAGTCCGGAACAATTTGAAAACCAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCATATAGCCATTTCCGGACATACTGGTCTGAATGTTACCCATTC  >  REL606/1616629‑1616770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑