New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 666130	NA (NA)	128 (1.990)	81/200	0.0	NA	noncoding (1443/1443 nt)	IS150	repeat region
	?	REL606	= 711957	NA (NA)					coding (102/1665 nt)	rhsC	rhsC element core protein RshC

CCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCC  >  REL606/711882‑712054                                                                            |                                                                                                  ccccTGCCGTCCACCCCCCCCCGCACCACCACCGGTTACCGGACAAAAACGCCGGCGCCGGTGGGG‑GCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAAc                                                                         <  1:1614675/98‑1 (MQ=11)    cTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCg                                                                       >  2:1553970/1‑101 (MQ=32)     tGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCgg                                                                      <  1:426016/101‑1 (MQ=33)     tGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCgg                                                                      >  2:609381/1‑101 (MQ=33)             aTCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTcaca                                                              >  2:1561566/1‑101 (MQ=255)              tCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCacac                                                             <  1:432701/101‑1 (MQ=255)                          ccTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGaa                                                 >  2:351355/1‑101 (MQ=255)                           cTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAAt                                                <  1:1129461/101‑1 (MQ=255)                            tACAGCAGTTACCGGACAAAACCGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATc                                               <  2:474277/101‑1 (MQ=255)                             aCAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCt                                              <  1:286333/101‑1 (MQ=255)                               agcagTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTgg                                            >  1:1321980/1‑101 (MQ=255)                                gcagTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGa                                           <  1:217891/101‑1 (MQ=255)                                   gTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGatat                                        <  2:455157/101‑1 (MQ=255)                                     tACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATcc                                      <  1:715713/101‑1 (MQ=255)                                       ccGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGc                                    >  2:1669909/1‑101 (MQ=255)                                          gACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATc                                 >  2:1617326/1‑101 (MQ=255)                                            cAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATccc                               <  1:609386/101‑1 (MQ=255)                                            cAAAAACCCCCGCGCCGGTGTGTAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATccttgtttt                               <  2:999942/101‑8 (MQ=21)                                                aaCGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTAt                           <  2:962746/101‑1 (MQ=255)                                                     ccGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCcac                      >  1:656075/1‑101 (MQ=255)                                                     ccGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCcac                      >  1:525202/1‑101 (MQ=255)                                                      cgcgCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCcaca                     <  1:1553976/101‑1 (MQ=255)                                                           cGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGAccc                <  1:1602049/101‑1 (MQ=255)                                                            ggTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCg               >  1:1264934/1‑101 (MQ=255)                                                               ggggAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCa            >  2:1480208/1‑101 (MQ=255)                                                                     ccTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAAc      >  1:1521337/1‑101 (MQ=255)                                                                      cTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAAcc     >  1:303854/1‑101 (MQ=255)                                                                      cTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAAcc     >  1:1231960/1‑101 (MQ=255)                                                                         ggCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCCCACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGcc  <  2:411697/101‑1 (MQ=255)                                                                         ggCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGcc  >  1:642232/1‑101 (MQ=255)                                                                            |                                                                                                  CCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCC  >  REL606/711882‑712054

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.