New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 16974 | 0 (0.000) | 73 (1.160) | 54/196 | 0.2 | 100% | intergenic (‑16/‑514) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region |
CGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCT > REL606/16874‑17072 | cGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGt > 1:811378/1‑101 (MQ=255) aCAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtg < 1:555666‑M1/101‑3 (MQ=255) aCAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtg < 2:796892‑M1/101‑3 (MQ=255) tcatcGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtact < 1:1607421‑M1/101‑7 (MQ=255) atcGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactga < 2:1237287‑M1/101‑9 (MQ=255) tcGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgac < 1:1091463‑M1/101‑10 (MQ=255) cGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgacc > 2:1332967‑M1/1‑91 (MQ=255) tgctgcTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaa > 2:711096‑M1/1‑84 (MQ=255) gctgctTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaag < 2:1590726‑M1/101‑19 (MQ=255) gctgctTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaag < 1:1194159‑M1/101‑19 (MQ=255) gctgctTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaag < 2:1698239‑M1/101‑19 (MQ=255) gctTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttg > 2:589701‑M1/1‑80 (MQ=255) ctTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttgg > 2:600210‑M1/1‑79 (MQ=255) ctTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttgg < 1:186185‑M1/101‑23 (MQ=255) ttCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttgga > 1:979429‑M1/1‑78 (MQ=255) tCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggac > 1:1583008‑M1/1‑77 (MQ=255) cATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggaca < 1:1574234‑M1/101‑26 (MQ=255) tGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagtt > 2:882737‑M1/1‑73 (MQ=255) gCTCTCTTCTCCTTGACCTTACGGTCAGTAAGATGCACTCTACATGTGTTCAGCATATAGGGGTCCTCGGGTtgtactgtccccaaaaagttggagcgtta < 2:1706054‑M1/101‑30 (MQ=255) gCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagtta > 1:184456‑M1/1‑72 (MQ=255) gCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagtta < 2:646633‑M1/101‑30 (MQ=255) ctctctTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaa < 1:235494‑M1/101‑31 (MQ=255) ctctctTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaa > 2:498703‑M1/1‑71 (MQ=255) ctctTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaac < 2:1583002‑M1/101‑33 (MQ=255) ctctTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaac < 1:1236068‑M1/101‑33 (MQ=255) ttctCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacg < 1:8211‑M1/101‑36 (MQ=255) ctcCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgag < 2:979424‑M1/101‑38 (MQ=255) ctcCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgag < 1:1675460‑M1/101‑38 (MQ=255) tcCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgagg < 2:315918‑M1/101‑39 (MQ=255) ccTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggc > 1:28151‑M1/1‑62 (MQ=255) cTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggca < 1:600215‑M1/101‑41 (MQ=255) cTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggca < 1:184444‑M1/101‑41 (MQ=255) ttGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGGCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcat < 2:1112776‑M1/101‑42 (MQ=255) ttGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcat > 2:1600888‑M1/1‑60 (MQ=255) tGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcata < 2:1162057‑M1/101‑43 (MQ=255) tGACCTTACGGTCAATAAGGGCCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcata < 2:1070204‑M1/101‑43 (MQ=255) ccTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatatag > 2:216746‑M1/1‑56 (MQ=255) ccTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatatag < 1:668825‑M1/101‑46 (MQ=255) cTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg > 2:1252394‑M1/1‑55 (MQ=255) cTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg > 1:1234232‑M1/1‑55 (MQ=255) ttACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt > 1:879720‑M1/1‑54 (MQ=255) gggcagtAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggactataggtctga > 2:131679‑M1/4‑50 (MQ=255) gTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgat < 1:775774‑M1/101‑53 (MQ=255) aGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattcc > 2:1343956‑M1/1‑46 (MQ=255) gTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccg < 1:1010236‑M1/101‑57 (MQ=255) aaGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgat > 1:232354‑M1/1‑43 (MQ=255) gatctactctaCATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatat < 2:610739‑M1/96‑61 (MQ=255) agGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatatt > 2:1118926‑M1/1‑40 (MQ=255) aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaat < 1:1435760‑M1/101‑66 (MQ=255) aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaat > 2:559256‑M1/1‑36 (MQ=255) aCTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatatagatc > 1:610744‑M1/1‑36 (MQ=255) ctctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaatt < 1:684019‑M1/101‑67 (MQ=255) tctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattg > 1:237453‑M1/1‑34 (MQ=255) tctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattg > 2:485537‑M1/1‑34 (MQ=255) tctACATGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattg > 1:1190931‑M1/1‑34 (MQ=255) aTGTGTTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtc > 2:1545954‑M1/1‑29 (MQ=255) gtTCAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagac < 1:1522531‑M1/101‑77 (MQ=255) cAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctt > 2:1342006‑M1/1‑22 (MQ=255) cAGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctt > 1:775055‑M1/1‑22 (MQ=255) aGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt > 1:956986‑M1/1‑21 (MQ=255) aGCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt > 1:923175‑M1/1‑21 (MQ=255) gCATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttt < 1:1252399‑M1/101‑82 (MQ=255) cATATAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttta < 2:28151‑M1/101‑83 (MQ=255) atatAGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaa > 2:392543‑M1/1‑18 (MQ=255) tataGGGGGCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaat < 1:53883‑M1/101‑85 (MQ=255) gggggCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttca < 2:292858‑M1/101‑89 (MQ=255) ggggCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcag < 1:1433116‑M1/101‑90 (MQ=255) gggCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcagg < 2:471788‑M1/101‑91 (MQ=255) gggCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcagg < 2:1590917‑M1/101‑91 (MQ=255) gCCTCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggct < 1:1044759‑M1/101‑93 (MQ=255) tCGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaat < 1:1332973‑M1/101‑96 (MQ=255) cGGGTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaatt < 1:401306‑M1/101‑97 (MQ=255) ggTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattct > 2:1342928‑M1/1‑3 (MQ=255) ggTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattct < 2:385612‑M1/101‑99 (MQ=255) ggTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattct > 1:504109‑M1/1‑3 (MQ=255) ggTtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattct > 1:672616‑M1/1‑3 (MQ=255) | CGACAATCATCGCCTTATGCTGCTTCATTGCTCTCTTCTCCTTGACCTTACGGTCAGTAAGAGGCACTCTACATGTGTTCAGCATATAGGGGGCCTCGGGTTGATAGTAAAATATCACTCGGGGCTTTTCTCTATCTGCCGTTCAGCTAATGCCTGAGACAGATAGCCTCAAGCACCCGCCGCTATTATATCGCTCTCT > REL606/16874‑17072 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |