| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | REL606 | 588,492 | +AA | intergenic (‑219/‑50) | ybdK ← / → insJ‑1 | gamma‑glutamyl:cysteine ligase/IS150 hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 588,490 | 1 | . | A | 100.0% | 223.1 / NA | 60 | intergenic (‑217/‑52) | ybdK/insJ‑1 | gamma‑glutamyl:cysteine ligase/IS150 hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (25/35); total (25/35) | |||||||||||
| * | REL606 | 588,490 | 2 | . | A | 100.0% | 225.5 / NA | 60 | intergenic (‑217/‑52) | ybdK/insJ‑1 | gamma‑glutamyl:cysteine ligase/IS150 hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (25/35); total (25/35) | |||||||||||
AATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATC > REL606/588392‑588590 || aaTTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aa > 2:51980/1‑101 (MQ=255)aaTTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aa > 2:462077/1‑101 (MQ=255) tttGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTCAGGATTGAGCCCTGCAGAAAAAAACGGGTTCAGCTTC‑‑aaat < 2:248490/101‑3 (MQ=255) ttGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aaaag > 2:1707819/1‑98 (MQ=255) ttGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aaaag > 1:1207026/1‑98 (MQ=255) ttGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aaaag < 1:709283/101‑4 (MQ=255) ggCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aaaagtt > 1:1144778/1‑96 (MQ=255) gCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aaaagttg < 1:793799/101‑7 (MQ=255) tACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aaaagttgta < 2:1299108/101‑9 (MQ=255) tACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aaaagttgta < 1:1576758/101‑9 (MQ=255) cTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACt > 1:1071524/1‑101 (MQ=255) cTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACt > 2:386056/1‑101 (MQ=255) ttttGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTg < 1:141075/101‑1 (MQ=255) ttttGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTg < 2:456947/101‑1 (MQ=255) gCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCAcc < 2:1143427/101‑1 (MQ=255) tgACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCAtttt < 2:223293/101‑1 (MQ=255) gACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTttg > 2:45135/1‑101 (MQ=255) aGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTgg < 2:1325004/101‑1 (MQ=255) gTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGa > 2:480836/1‑101 (MQ=255) ttATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGAc < 2:282955/101‑1 (MQ=255) tATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACg > 1:260713/1‑101 (MQ=255) aTGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGa > 2:1069464/1‑101 (MQ=255) tGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGAt > 1:796551/1‑101 (MQ=255) tGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGAt < 1:516656/101‑1 (MQ=255) ggCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATg < 2:50687/101‑1 (MQ=255) gTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAAt > 2:1608150/1‑101 (MQ=255) atGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAATAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAAt < 1:1689166/100‑1 (MQ=38) cTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGa > 2:64776/1‑101 (MQ=255) tGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa < 1:993538/101‑1 (MQ=255) gACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:494039/101‑1 (MQ=255) gACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 2:1071519/101‑1 (MQ=255) gACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 1:635589/101‑1 (MQ=255) gACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAt < 2:593399/101‑1 (MQ=255) aCTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa > 1:755916/1‑101 (MQ=255) aCTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATa < 1:110053/101‑1 (MQ=255) tggCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc < 1:1114907/101‑1 (MQ=255) ggCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGAGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt < 1:4459/101‑1 (MQ=25) gCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa > 2:1200857/1‑101 (MQ=255) gCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTa > 2:322804/1‑101 (MQ=255) aagaaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata < 1:265244/101‑1 (MQ=255) agaaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat < 2:129529/101‑1 (MQ=255) agaaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat < 1:1608156/101‑1 (MQ=255) agaaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat < 1:706575/101‑1 (MQ=255) aaTTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGt < 2:260713/101‑1 (MQ=255) ttttGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCa < 1:1586390/101‑1 (MQ=255) tttGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCaa < 1:1707825/101‑1 (MQ=255) ttGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCaaa > 2:1491358/1‑101 (MQ=255) ttGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCaaa < 1:1561171/101‑1 (MQ=255) tGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAg < 1:537846/101‑1 (MQ=255) gACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGc > 2:752190/1‑101 (MQ=255) caCGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTTCTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGc < 1:1136370/100‑1 (MQ=21) gATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaa > 2:526209/1‑101 (MQ=255) gATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaa < 1:348501/101‑1 (MQ=255) ttGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa > 1:1644016/1‑101 (MQ=255) ttGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa < 2:340584/101‑1 (MQ=255) ttGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCaaaa < 1:1123274/101‑1 (MQ=255) tGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAAt < 2:750352/101‑1 (MQ=255) gTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAcc < 2:1214981/101‑1 (MQ=255) cATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCt < 2:1004170/101‑1 (MQ=255) aTGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt > 1:449146/1‑101 (MQ=255) aTGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt > 1:1657168/1‑101 (MQ=255) aTGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtt > 2:1141109/1‑101 (MQ=255) gCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt > 2:544281/1‑101 (MQ=255) aGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGa < 1:111760/101‑1 (MQ=255) aaaaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAg > 2:495303/1‑101 (MQ=255) aaaaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgc > 2:105975/1‑101 (MQ=255) aaCGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAgcgc < 1:1278006/101‑1 (MQ=255) gggTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCtt < 2:417472/101‑1 (MQ=255) ttCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGaa > 2:670744/1‑101 (MQ=255) ttCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGaa > 2:1247734/1‑101 (MQ=255) tCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAg > 2:762206/1‑101 (MQ=255) c‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATc > 1:211017/1‑101 (MQ=33) || AATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATC > REL606/588392‑588590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |