Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 4,628,460 | T→G | 100% | T3P (ACC→CCC) | arcA ← | DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 4,628,460 | 0 | T | G | 100.0% | 461.0 / NA | 120 | T3P (ACC→CCC) | arcA | DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (61/59); total (61/59) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 120 total aligned reads displayed.
CGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAG > REL606/4628413‑4628505 | cGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTg > 1:493808/1‑51 (MQ=255) cGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTg < 1:3590011/51‑1 (MQ=255) tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa > 1:10206258/1‑51 (MQ=255) tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa < 1:2608121/51‑1 (MQ=255) tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa > 1:5442915/1‑51 (MQ=255) tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa > 1:4225474/1‑51 (MQ=255) tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa < 1:6764539/51‑1 (MQ=255) tgtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCa < 1:1056889/51‑1 (MQ=255) gtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCAt < 1:1129609/51‑1 (MQ=255) gtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCAt > 1:10308121/1‑51 (MQ=255) gtTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCAt > 1:1417301/1‑51 (MQ=255) ttGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATg > 1:6271608/1‑51 (MQ=255) ttGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATg > 1:1763900/1‑51 (MQ=255) tGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCt < 1:6688264/45‑1 (MQ=255) tGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCt < 1:5610044/45‑1 (MQ=255) tGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGt > 1:2922316/1‑51 (MQ=255) tGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGt > 1:4640373/1‑51 (MQ=255) gCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGtt < 1:618216/51‑1 (MQ=255) gtgtTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTg < 1:7231488/51‑1 (MQ=255) gtgtTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTg > 1:9653901/1‑51 (MQ=255) gtgtTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTg < 1:5661363/51‑1 (MQ=255) gtTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCt > 1:6218854/1‑51 (MQ=255) ttACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTa < 1:8712904/51‑1 (MQ=255) ttACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTa < 1:4069030/51‑1 (MQ=255) ttACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTa < 1:6865410/51‑1 (MQ=255) ttACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTa < 1:10517426/51‑1 (MQ=255) ttACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTa < 1:1405376/51‑1 (MQ=255) tACCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGttt < 1:8205834/46‑1 (MQ=255) aCCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTAcc < 1:5290391/51‑1 (MQ=255) aCCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTAcc > 1:9406709/1‑51 (MQ=255) aCCAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTAcc > 1:3535064/1‑51 (MQ=255) cAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTa > 1:2214437/1‑51 (MQ=255) cAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTa < 1:963332/51‑1 (MQ=255) cAACTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTa < 1:271017/51‑1 (MQ=255) aaCTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTaa > 1:8743281/1‑51 (MQ=255) aaCTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTaa < 1:1263707/51‑1 (MQ=255) aCTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTaaa > 1:5900712/1‑51 (MQ=255) cTCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAAt < 1:7548633/51‑1 (MQ=255) tCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAAtt > 1:4437504/1‑51 (MQ=255) tCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAAtt > 1:4377515/1‑51 (MQ=255) tCGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAAtt < 1:4215287/51‑1 (MQ=255) cGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTg > 1:2083534/1‑51 (MQ=255) cGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTg < 1:9108930/51‑1 (MQ=255) cGTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTg > 1:3951309/1‑51 (MQ=255) gTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGc > 1:8268844/1‑51 (MQ=255) gTTTTCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGc < 1:2553518/51‑1 (MQ=255) ttttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGcc > 1:2397997/1‑51 (MQ=255) tttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCa < 1:1865067/51‑1 (MQ=255) tttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCa > 1:3985606/1‑51 (MQ=255) tttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCa < 1:9651689/51‑1 (MQ=255) tttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCa < 1:796470/51‑1 (MQ=255) ttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCaa > 1:5298424/1‑51 (MQ=255) ttCAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCaa > 1:3092162/1‑51 (MQ=255) cAACGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACt > 1:7707457/1‑51 (MQ=255) aaCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTa < 1:5250389/51‑1 (MQ=255) aaCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTa > 1:678863/1‑51 (MQ=255) aaCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTa < 1:6839389/51‑1 (MQ=255) aaCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTa < 1:598461/51‑1 (MQ=255) aaCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTa < 1:1170495/51‑1 (MQ=255) aCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTaa > 1:9692144/1‑51 (MQ=255) aCGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTaa < 1:8745955/51‑1 (MQ=255) cGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTaaa > 1:1038681/1‑51 (MQ=255) cGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTaaa < 1:295446/51‑1 (MQ=255) cGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTaaa < 1:1725584/51‑1 (MQ=255) gATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAAt > 1:9059692/1‑51 (MQ=255) gATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAAt < 1:10141474/51‑1 (MQ=255) aTAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATc > 1:7358776/1‑51 (MQ=255) tAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCg < 1:4751083/51‑1 (MQ=255) tAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCg < 1:2567863/51‑1 (MQ=255) aaGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa < 1:8422724/51‑1 (MQ=255) aaGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa > 1:6618852/1‑51 (MQ=255) aaGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa > 1:8797051/1‑51 (MQ=255) aaGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa > 1:6202331/1‑51 (MQ=255) aaGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa < 1:7327675/51‑1 (MQ=255) aaGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa > 1:2505063/1‑51 (MQ=255) aaGAATGTGCGGGGGCTGCAAGTTTGCTACCTAAATTGCCAACTAAATCGa < 1:6793386/51‑1 (MQ=255) aGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaa > 1:4987122/1‑51 (MQ=255) aGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaa < 1:6274650/51‑1 (MQ=255) aGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaa > 1:10729338/1‑51 (MQ=255) gAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaaa > 1:1528255/1‑51 (MQ=255) gAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaaa > 1:1790166/1‑51 (MQ=255) gAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaaa > 1:3175663/1‑51 (MQ=255) aaTGTGTGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAAc > 1:7135452/1‑51 (MQ=39) aaTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAAc > 1:4414223/1‑51 (MQ=255) aaTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAAc < 1:4631712/51‑1 (MQ=255) aTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACa < 1:7243583/51‑1 (MQ=255) aTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACa < 1:2165632/51‑1 (MQ=255) aTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACa < 1:10324132/51‑1 (MQ=255) aTGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACa > 1:5282024/1‑51 (MQ=255) tgtgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAg < 1:6042974/51‑1 (MQ=255) gtgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAgg > 1:8269754/1‑51 (MQ=255) gtgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAgg < 1:1755804/51‑1 (MQ=255) gtgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAgg < 1:8333285/51‑1 (MQ=255) tgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGa > 1:7987533/1‑51 (MQ=255) tgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGa > 1:31566/1‑51 (MQ=255) tgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGa > 1:3953040/1‑51 (MQ=255) tgCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGa > 1:10698919/1‑51 (MQ=255) tgCGGGGGCTGCATGTTTGCTACCTAAATTACCAACTAAATCGAAACAGGa > 1:5572744/1‑51 (MQ=38) gCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGaa < 1:10044119/51‑1 (MQ=255) cGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAg > 1:7825244/1‑51 (MQ=255) | CGTGTTGCGTGTTACCAACTCGTTTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAG > REL606/4628413‑4628505 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |