| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 4,384,430 | C→A | 100% | S29Y (TCT→TAT) | yjeB → | predicted DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,384,430 | 0 | C | A | 100.0% | 422.8 / NA | 119 | S29Y (TCT→TAT) | yjeB | predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (58/61); total (58/61) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 119 total aligned reads displayed.
CGCTGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTCTGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCAAAA > REL606/4384382‑4384477 | cgcTGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATg > 1:5414329/1‑51 (MQ=255)cgcTGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATg > 1:7700367/1‑51 (MQ=255)cgcTGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATg < 1:8326735/51‑1 (MQ=255) gcTGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGa > 1:635233/1‑51 (MQ=255) cTGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGaa < 1:222897/51‑1 (MQ=255) tGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAg < 1:1062371/51‑1 (MQ=255) tGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAg > 1:1689660/1‑51 (MQ=255) tGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAg < 1:2965573/51‑1 (MQ=255) tGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAg < 1:1425075/51‑1 (MQ=255) gATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGt > 1:4879212/1‑51 (MQ=255) aTCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtg < 1:326546/51‑1 (MQ=255) aTCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtg > 1:741043/1‑51 (MQ=255) tCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtga < 1:3024867/51‑1 (MQ=255) tCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtga < 1:6783717/51‑1 (MQ=255) tCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtga > 1:7260709/1‑51 (MQ=255) cTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGaa > 1:834746/1‑46 (MQ=255) cTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGaa > 1:7017441/1‑46 (MQ=255) tACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGaa > 1:9636811/1‑45 (MQ=255) tACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGaa > 1:1899363/1‑45 (MQ=255) tACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtgact < 1:7913284/51‑1 (MQ=255) tACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtgact < 1:619285/51‑1 (MQ=255) aCATGGCGTCATTGCTAGAAGGGCGGATGACCAGTATTTATGAAGtgactg < 1:6327290/51‑1 (MQ=255) aCATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGaa > 1:9305739/1‑44 (MQ=255) aCATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtgactg < 1:2936968/51‑1 (MQ=255) aCATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtgactg < 1:1170659/51‑1 (MQ=255) cATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtgactga < 1:6948030/51‑1 (MQ=255) cATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtgactga < 1:2970825/51‑1 (MQ=255) cATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtgactga < 1:9251098/51‑1 (MQ=255) aTGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtgactgac < 1:4320562/51‑1 (MQ=255) aTGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtgactgac > 1:2022505/1‑51 (MQ=255) aTGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGtgactgac > 1:7920097/1‑51 (MQ=255) tGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACg < 1:6120804/51‑1 (MQ=255) tGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACg > 1:1933053/1‑51 (MQ=255) tGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACg > 1:1620321/1‑51 (MQ=255) tGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACg > 1:10328341/1‑51 (MQ=255) ggCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGaa < 1:715427/40‑1 (MQ=255) ggCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGt > 1:1944709/1‑51 (MQ=255) ggCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGt < 1:2701372/51‑1 (MQ=255) ggCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGt > 1:1200667/1‑51 (MQ=255) gCGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTc < 1:4324909/51‑1 (MQ=255) cGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCt > 1:2846674/1‑51 (MQ=255) cGTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCt < 1:8378913/51‑1 (MQ=255) gTCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTa < 1:9334519/51‑1 (MQ=255) tCATTGCCAGAAGGGCGGATGACCCGTATTTATGAAGTGACTGACGTCTAc < 1:4177261/51‑1 (MQ=255) tCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGt > 1:2586208/1‑47 (MQ=255) tCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTAc < 1:7582296/51‑1 (MQ=255) tCATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTAc < 1:2528370/51‑1 (MQ=255) cATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACg < 1:2341456/51‑1 (MQ=255) cATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACg > 1:3254710/1‑51 (MQ=255) cATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACg < 1:3262326/51‑1 (MQ=255) cATTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACg > 1:3413762/1‑51 (MQ=255) aTTGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACgg > 1:2153665/1‑51 (MQ=255) tGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCg > 1:6594162/1‑51 (MQ=255) tGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCg < 1:7412959/51‑1 (MQ=255) tGCCAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCg > 1:7435465/1‑51 (MQ=255) cAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGtct > 1:2792994/1‑51 (MQ=255) cAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGtct > 1:5407720/1‑51 (MQ=255) cAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGtct > 1:10471465/1‑51 (MQ=255) cAGAAGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGtct > 1:1657157/1‑51 (MQ=255) aaGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTccc > 1:4423290/1‑51 (MQ=255) aGGGCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCg < 1:4121632/51‑1 (MQ=255) ggCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTa < 1:5389555/51‑1 (MQ=255) ggCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTa < 1:10169006/51‑1 (MQ=255) gCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTaa < 1:4048685/51‑1 (MQ=255) gCGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTaa < 1:2512977/51‑1 (MQ=255) cGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAAt < 1:10112713/51‑1 (MQ=255) cGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAAt < 1:8033524/51‑1 (MQ=255) cGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAAt > 1:1268460/1‑51 (MQ=255) cGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAAt > 1:904497/1‑51 (MQ=255) cGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAAt > 1:3949746/1‑51 (MQ=255) cGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAAt > 1:8542123/1‑51 (MQ=255) cGGATGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAAt < 1:2844199/51‑1 (MQ=255) aTGACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCat > 1:5990568/1‑51 (MQ=255) gACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCTCGTAATCatat < 1:9950548/51‑1 (MQ=255) gACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCatat < 1:3290052/51‑1 (MQ=255) gACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCatat > 1:8551411/1‑51 (MQ=255) gACCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCatat < 1:9855729/51‑1 (MQ=255) aCCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATg > 1:10302632/1‑51 (MQ=255) aCCAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATg < 1:7425124/51‑1 (MQ=255) ccAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATgg > 1:5065752/1‑51 (MQ=255) ccAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATgg < 1:16226/51‑1 (MQ=255) cAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGt < 1:6863825/51‑1 (MQ=255) cAGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGt > 1:6151116/1‑51 (MQ=255) aGTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTc > 1:802255/1‑51 (MQ=255) gTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCa > 1:9787167/1‑51 (MQ=255) gTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCa < 1:9030400/51‑1 (MQ=255) gTATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCa < 1:4402588/51‑1 (MQ=255) tATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaa < 1:349986/51‑1 (MQ=255) tATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaa < 1:3892990/51‑1 (MQ=255) tATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaa < 1:7200231/51‑1 (MQ=255) tATTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaa > 1:6666121/1‑51 (MQ=255) aTTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaaa < 1:8944884/51‑1 (MQ=255) aTTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaaa > 1:1764008/1‑51 (MQ=255) aTTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaaa > 1:2036459/1‑51 (MQ=255) aTTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaaa < 1:2363268/51‑1 (MQ=255) aTTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaaa > 1:10921457/1‑51 (MQ=255) aTTTATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaaa > 1:6493199/1‑51 (MQ=255) tttATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATc > 1:3119377/1‑39 (MQ=255) tttATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaaaa > 1:8077242/1‑51 (MQ=255) tttATGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCaaaa > 1:4044926/1‑51 (MQ=255) | CGCTGATCTACATGGCGTCATTGCCAGAAGGGCGGATGACCAGTATTTCTGAAGTGACTGACGTCTACGGCGTCTCCCGTAATCATATGGTCAAAA > REL606/4384382‑4384477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |