| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 4,201,980 | G→A | 100% | P194S (CCT→TCT) | iclR ← | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,201,980 | 0 | G | A | 100.0% | 504.0 / NA | 141 | P194S (CCT→TCT) | iclR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (70/71); total (70/71) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 147 total aligned reads displayed.
AATAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGGAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCGGTGCA > REL606/4201932‑4202027 | aaTAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGaag > 1:3166476/1‑51 (MQ=255) aTAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACagaaga > 1:6562301/1‑51 (MQ=255) aTAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACagaaga > 1:5302498/1‑51 (MQ=255) tAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGac < 1:6939603/51‑1 (MQ=255) tAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGac > 1:8187096/1‑51 (MQ=255) aaCCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGaca > 1:3753640/1‑51 (MQ=255) aaCCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGaca < 1:3388773/51‑1 (MQ=255) aaCCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGaca > 1:7707956/1‑51 (MQ=255) aCCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGacac > 1:4734131/1‑51 (MQ=255) ccccGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGacac < 1:1811116/50‑1 (MQ=255) cccGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCa < 1:8521208/51‑1 (MQ=255) cccGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCa < 1:6563086/51‑1 (MQ=255) ccGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAg < 1:9043580/51‑1 (MQ=255) ccGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAg < 1:5647037/51‑1 (MQ=255) cGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGc < 1:4123481/51‑1 (MQ=255) cGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGc < 1:9332639/51‑1 (MQ=255) cGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGc < 1:10423555/51‑1 (MQ=255) cGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGc > 1:6435791/1‑51 (MQ=255) gTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCg > 1:808212/1‑51 (MQ=255) gTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCg < 1:2962641/51‑1 (MQ=255) gTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCg < 1:6522787/51‑1 (MQ=255) gTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCg > 1:3398041/1‑51 (MQ=255) gTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCg > 1:2840498/1‑51 (MQ=255) tttGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGt > 1:7493793/1‑51 (MQ=255) ttGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGtt > 1:4456639/1‑51 (MQ=255) ttGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGtt > 1:6740684/1‑51 (MQ=255) ttGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGtt < 1:3093772/51‑1 (MQ=255) tGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTg > 1:6954023/1‑51 (MQ=255) tGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTg > 1:1777281/1‑51 (MQ=255) tGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTg < 1:4112941/51‑1 (MQ=255) gcgcGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGc < 1:1001617/51‑1 (MQ=255) gcgcGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGc < 1:2975373/51‑1 (MQ=255) gcgcGTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGc < 1:1502841/51‑1 (MQ=255) cgcgTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCg > 1:2817090/1‑51 (MQ=255) gcgTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGt < 1:7358438/51‑1 (MQ=255) cgTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTg > 1:690085/1‑51 (MQ=255) gTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTgg < 1:5310867/51‑1 (MQ=255) gTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTgg > 1:792308/1‑51 (MQ=255) gTTTGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTgg < 1:2424717/51‑1 (MQ=255) tttGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTggg > 1:9076961/1‑51 (MQ=255) tttGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTggg > 1:4521796/1‑51 (MQ=255) tttGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTggg > 1:1380359/1‑51 (MQ=255) tttGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTggg > 1:295983/1‑51 (MQ=255) ttGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTggg > 1:631781/1‑50 (MQ=255) ttGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGt < 1:4369985/51‑1 (MQ=255) ttGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGt < 1:8244551/51‑1 (MQ=255) tGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGta < 1:9009068/51‑1 (MQ=255) tGGGCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGta < 1:358086/51‑1 (MQ=255) gggCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGtat < 1:8544681/51‑1 (MQ=255) gggCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGtat > 1:1154902/1‑51 (MQ=255) ggCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGtata < 1:2875611/51‑1 (MQ=255) ggCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGtata < 1:8850304/51‑1 (MQ=255) gCGAGATCTTCTTTTAAATGCACAGAAGACTCCAGCGTTGCGTGGGTATAg < 1:791021/51‑1 (MQ=255) gCGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAg > 1:601912/1‑51 (MQ=255) cGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAgg > 1:10818385/1‑51 (MQ=255) cGAGATCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAgg > 1:10063556/1‑51 (MQ=255) gagaTCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGc > 1:7768293/1‑51 (MQ=255) agaTCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCa > 1:2727330/1‑51 (MQ=255) aTCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATg > 1:7593736/1‑51 (MQ=255) aTCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATg > 1:8444500/1‑51 (MQ=255) aTCTTCTTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATg > 1:6775666/1‑51 (MQ=255) tcttctTTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGt > 1:10171292/1‑51 (MQ=255) cttcttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAgg < 1:6831496/45‑1 (MQ=255) cttcttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGc < 1:2298454/46‑1 (MQ=255) cttcttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTa > 1:9212781/1‑51 (MQ=255) ttcttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTaa > 1:4653141/1‑51 (MQ=255) ttcttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTaa > 1:9667016/1‑51 (MQ=255) ttcttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTaa > 1:166771/1‑51 (MQ=255) ttcttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTaa < 1:10046098/51‑1 (MQ=255) tcttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAAc > 1:5306649/1‑51 (MQ=255) tcttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAAc > 1:3031770/1‑51 (MQ=255) tcttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAAc > 1:5735746/1‑51 (MQ=255) cttTTAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAAcc < 1:5130258/51‑1 (MQ=255) ttttAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAAccc > 1:9683270/1‑51 (MQ=255) tttAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCt < 1:4624951/51‑1 (MQ=255) tttAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCt > 1:10142197/1‑51 (MQ=255) tttAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCt > 1:5980243/1‑51 (MQ=255) tttAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCt < 1:1722667/51‑1 (MQ=255) tttAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCt > 1:8567799/1‑51 (MQ=255) ttAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCtt > 1:1576457/1‑51 (MQ=255) ttAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCtt < 1:9265266/51‑1 (MQ=255) tAAATGCACAGAAGACACCAGCGTTGCGTTGGTATAGGCATGTAACCCttt > 1:1457491/1‑51 (MQ=255) tAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCttt > 1:10502039/1‑51 (MQ=255) tAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCttt < 1:711491/51‑1 (MQ=255) tAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCttt > 1:9457518/1‑51 (MQ=255) tAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCttt > 1:1807870/1‑51 (MQ=255) tAAATGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCttt > 1:886722/1‑51 (MQ=255) aaaTGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTg < 1:6661781/51‑1 (MQ=255) aaaTGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTg > 1:8411483/1‑51 (MQ=255) aaaTGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTg < 1:3278984/51‑1 (MQ=255) aTGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCg < 1:1989564/51‑1 (MQ=255) aTGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCg > 1:9430368/1‑51 (MQ=255) aTGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCg < 1:6247193/51‑1 (MQ=255) aTGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCg < 1:4367293/51‑1 (MQ=255) aTGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCg < 1:9738532/51‑1 (MQ=255) aTGCACAGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCg > 1:5222146/1‑51 (MQ=255) cacaGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCGGTg > 1:4770098/1‑51 (MQ=255) cacaGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCGGTg < 1:8305771/51‑1 (MQ=255) acaGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCGGTgc > 1:9904494/1‑51 (MQ=255) caGAAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCGGTgca > 1:1897907/1‑51 (MQ=255) | AATAACCCCGTTTGCGCGTTTGGGCGAGATCTTCTTTTAAATGCACAGGAGACACCAGCGTTGCGTGGGTATAGGCATGTAACCCTTTGCGGTGCA > REL606/4201932‑4202027 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |