| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 4,133,104 | G→A | 100% | R34R (CGC→CGT) | ppc ← | phosphoenolpyruvate carboxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,133,104 | 0 | G | A | 100.0% | 460.6 / NA | 133 | R34R (CGC→CGT) | ppc | phosphoenolpyruvate carboxylase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (67/66); total (67/66) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 134 total aligned reads displayed.
ATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACGCGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAG > REL606/4133056‑4133151 | atcatTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTAcacg < 1:4701301/51‑1 (MQ=255) tcatTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGt < 1:6676470/51‑1 (MQ=255) tcatTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGt < 1:518859/51‑1 (MQ=255) tcatTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGt < 1:4702747/51‑1 (MQ=255) catTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGtt < 1:7176496/51‑1 (MQ=255) catTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGtt < 1:10018876/51‑1 (MQ=255) atTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTc < 1:7671691/51‑1 (MQ=255) atTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTc < 1:686477/51‑1 (MQ=255) atTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTc < 1:5455852/51‑1 (MQ=255) ttGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCa < 1:4578864/51‑1 (MQ=255) ttGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCa > 1:10326217/1‑51 (MQ=255) ttGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCa < 1:220616/51‑1 (MQ=255) ttGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCa < 1:10064825/51‑1 (MQ=255) tGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCaa < 1:3530542/51‑1 (MQ=255) tGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCaa < 1:6433959/51‑1 (MQ=255) gCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGtt > 1:8104565/1‑47 (MQ=255) gCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAg < 1:6739115/51‑1 (MQ=255) gCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAg > 1:4416163/1‑51 (MQ=255) ccAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGa > 1:4745380/1‑51 (MQ=255) ccAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGa > 1:8879962/1‑51 (MQ=255) ccAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGa < 1:8978714/51‑1 (MQ=255) ccAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGa < 1:857/51‑1 (MQ=255) cAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGna < 1:2033305/51‑1 (MQ=255) aGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAAt > 1:4123320/1‑51 (MQ=255) aGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAAt < 1:1938848/51‑1 (MQ=255) cgcgTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAAtgt > 1:1432407/1‑51 (MQ=255) gcgTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAAtgtg < 1:7277302/51‑1 (MQ=255) cgTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATgtgt > 1:4199455/1‑51 (MQ=255) cgTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATgtgt < 1:660090/51‑1 (MQ=255) gTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGtt < 1:10564966/51‑1 (MQ=255) gTGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGtt < 1:234766/51‑1 (MQ=255) tGAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTtc < 1:3769876/51‑1 (MQ=255) gAAGATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTtct < 1:10720068/51‑1 (MQ=255) gATTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTccc > 1:7120206/1‑51 (MQ=255) aTTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCa > 1:730025/1‑51 (MQ=255) aTTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCa < 1:2539415/51‑1 (MQ=255) aTTTCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCa > 1:4967799/1‑51 (MQ=255) tttCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCaa > 1:8042639/1‑51 (MQ=255) tttCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCaa > 1:4553787/1‑51 (MQ=255) ttCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAAc < 1:7632679/51‑1 (MQ=255) ttCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAAc > 1:6884094/1‑51 (MQ=255) ttCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAAc < 1:5770667/51‑1 (MQ=255) ttCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAAc > 1:1970517/1‑51 (MQ=255) ttCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAAc < 1:7726339/51‑1 (MQ=255) tCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACg > 1:7250322/1‑51 (MQ=255) tCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACg > 1:9293050/1‑51 (MQ=255) tCGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACg < 1:5974477/51‑1 (MQ=255) cGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGc < 1:2868375/51‑1 (MQ=255) cGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGc > 1:8713770/1‑51 (MQ=255) cGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGc > 1:8089688/1‑51 (MQ=255) cGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGc < 1:9530523/51‑1 (MQ=255) cGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGc > 1:2768575/1‑51 (MQ=255) cGACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGc > 1:7452220/1‑51 (MQ=255) gACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCa < 1:3115792/51‑1 (MQ=255) gACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCa < 1:3248089/51‑1 (MQ=255) gACAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCa > 1:6282530/1‑51 (MQ=255) cAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATc > 1:4295360/1‑51 (MQ=255) cAACTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATc > 1:7516365/1‑51 (MQ=255) aaCTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATcc > 1:8645040/1‑51 (MQ=255) aCTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCt > 1:5474719/1‑51 (MQ=255) cTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCtt < 1:619597/51‑1 (MQ=255) cTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCtt > 1:7058940/1‑51 (MQ=255) cTTACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCtt < 1:10085093/51‑1 (MQ=255) ttACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTg > 1:828228/1‑51 (MQ=255) tnACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTg > 1:2237913/1‑51 (MQ=255) tACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGa > 1:9199211/1‑51 (MQ=255) tACGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGa > 1:2663331/1‑51 (MQ=255) aCGGATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGAt < 1:8602621/51‑1 (MQ=255) ggATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATgg > 1:5642754/1‑51 (MQ=255) ggATAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATgg > 1:6766103/1‑51 (MQ=255) aTAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGtt < 1:8997194/51‑1 (MQ=255) aTAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGtt > 1:1418719/1‑51 (MQ=255) aTAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGtt < 1:8448006/51‑1 (MQ=255) aTAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGtt > 1:1280434/1‑51 (MQ=255) tAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGttt > 1:943976/1‑51 (MQ=255) tAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGttt > 1:3488510/1‑51 (MQ=255) tAGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGttt > 1:1659011/1‑51 (MQ=255) aGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTtc > 1:9745302/1‑51 (MQ=255) aGTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTtc > 1:1147856/1‑51 (MQ=255) gTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTtct < 1:2580371/51‑1 (MQ=255) gTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTtct < 1:9753040/51‑1 (MQ=255) gTTTCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTtct < 1:2656668/51‑1 (MQ=255) tttCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTtctc > 1:757152/1‑51 (MQ=255) tttCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTtctc < 1:3360708/51‑1 (MQ=255) ttCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTcc > 1:9326499/1‑51 (MQ=255) tCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTccc > 1:3013094/1‑51 (MQ=255) tCTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTccc > 1:6755169/1‑51 (MQ=255) cTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCa > 1:1770875/1‑51 (MQ=255) cTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCa < 1:7996493/51‑1 (MQ=255) cTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCa > 1:9405071/1‑51 (MQ=255) cTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCa > 1:2109890/1‑51 (MQ=255) cTACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCa > 1:6239970/1‑51 (MQ=255) tACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAg < 1:1295535/51‑1 (MQ=255) tACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAg > 1:8998332/1‑51 (MQ=255) tACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAg > 1:2986218/1‑51 (MQ=255) tACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAg > 1:3627624/1‑51 (MQ=255) tACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAg < 1:6950978/51‑1 (MQ=255) tACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAg > 1:2057122/1‑51 (MQ=255) tACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAg < 1:8264627/51‑1 (MQ=255) tACACGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAg < 1:4968437/51‑1 (MQ=255) | ATCATTGCCAGCGCGTGAAGATTTCGACAACTTACGGATAGTTTCTACGCGTTCAAGAATGTGTTCTCCCAACGCATCCTTGATGGTTTCTCCCAG > REL606/4133056‑4133151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |