Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 3,407,065 | T→C | 100% | E483G (GAA→GGA) | kefB ← | glutathione‑regulated potassium‑efflux system protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 3,407,065 | 0 | T | C | 100.0% | 524.3 / NA | 136 | E483G (GAA→GGA) | kefB | glutathione‑regulated potassium‑efflux system protein |
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (81/55); total (81/55) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 137 total aligned reads displayed.
CGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTTCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGATA > REL606/3407017‑3407112 | cgcgcTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTccc < 1:2647712/51‑1 (MQ=255) gcgcTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCcca > 1:1177144/1‑51 (MQ=255) gcgcTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCcca > 1:6975444/1‑51 (MQ=255) gcgcTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCcca > 1:2574362/1‑51 (MQ=255) cgcTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCccac < 1:4706148/51‑1 (MQ=255) gcTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCccacc < 1:9458398/51‑1 (MQ=255) cTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCccacca < 1:877889/51‑1 (MQ=255) cTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCccacca < 1:9393873/51‑1 (MQ=255) tCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAg > 1:3586565/1‑51 (MQ=255) tCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAg < 1:8213401/51‑1 (MQ=255) tCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAg > 1:5935188/1‑51 (MQ=255) tCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAg > 1:533291/1‑51 (MQ=255) cgcAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCtt > 1:9317197/1‑51 (MQ=255) cgcAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCtt < 1:1350796/51‑1 (MQ=255) cgcAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCtt > 1:966633/1‑51 (MQ=255) cgcAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCtt > 1:8345908/1‑51 (MQ=255) cgcAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCtt < 1:1037874/51‑1 (MQ=255) cAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCa > 1:8073417/1‑51 (MQ=255) cAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCa < 1:1965889/51‑1 (MQ=255) cAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCa < 1:5287295/51‑1 (MQ=255) aaGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCAt < 1:7207142/51‑1 (MQ=255) aaGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCAt > 1:6626542/1‑51 (MQ=255) aGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCccacc > 1:6272182/1‑42 (MQ=255) aGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATg < 1:7363728/51‑1 (MQ=255) gAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATgg > 1:4045332/1‑51 (MQ=255) gAATATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATgg < 1:9168122/51‑1 (MQ=255) aaTATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCa > 1:10158741/1‑47 (MQ=255) aaTATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGgt > 1:4570222/1‑51 (MQ=255) aaTATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGgt < 1:3014523/51‑1 (MQ=255) aaTATGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGgt < 1:1696050/51‑1 (MQ=255) atatGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGgtg > 1:2992419/1‑51 (MQ=255) tatGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGgtgt < 1:3030484/51‑1 (MQ=255) tatGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGgtgt > 1:2786840/1‑51 (MQ=255) tatGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGgtgt > 1:4831739/1‑51 (MQ=255) atGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTc > 1:3826182/1‑51 (MQ=255) tGCAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCt > 1:10293206/1‑51 (MQ=255) cAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTc > 1:7241290/1‑51 (MQ=255) cAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTc < 1:371101/51‑1 (MQ=255) cAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTc < 1:10943407/51‑1 (MQ=255) cAAATGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTc < 1:9003832/51‑1 (MQ=255) aaaTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTcc > 1:1811907/1‑51 (MQ=255) aaaTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTcc > 1:5043410/1‑51 (MQ=255) aaTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCg > 1:8164653/1‑51 (MQ=255) aaTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCg < 1:7742941/51‑1 (MQ=255) aaTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCg > 1:6967143/1‑51 (MQ=255) aaTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCg < 1:5207358/51‑1 (MQ=255) aTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCgg < 1:10902077/51‑1 (MQ=255) aTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCgg < 1:6360766/51‑1 (MQ=255) aTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCgg > 1:5639648/1‑51 (MQ=255) aTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCgg < 1:4454923/51‑1 (MQ=255) aTGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCgg > 1:9448057/1‑51 (MQ=255) tGCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGc > 1:134969/1‑51 (MQ=255) gCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCt > 1:4001248/1‑51 (MQ=255) gCGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCt > 1:7867356/1‑51 (MQ=255) cGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCtt < 1:4196346/51‑2 (MQ=255) cGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTc < 1:5627877/51‑1 (MQ=255) cGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTc > 1:9861656/1‑51 (MQ=255) cGGAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTc < 1:4196345/51‑1 (MQ=255) ggAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCg > 1:633233/1‑51 (MQ=255) ggAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCg < 1:590889/51‑1 (MQ=255) ggAAAGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCg > 1:3989344/1‑51 (MQ=255) aaaGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGtt > 1:6488599/1‑51 (MQ=255) aaGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTa > 1:7209784/1‑51 (MQ=255) aaGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTa > 1:9848678/1‑51 (MQ=255) aGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTAc > 1:3944967/1‑51 (MQ=255) aGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTAc < 1:3847286/51‑1 (MQ=255) aGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTAc > 1:1519792/1‑51 (MQ=255) aGTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTAc > 1:7514081/1‑51 (MQ=255) gTGCTGCTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACa < 1:10097932/51‑1 (MQ=255) tgctgcTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAg < 1:5837629/51‑1 (MQ=255) tgctgcTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAg > 1:4932672/1‑51 (MQ=255) tgctgcTGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAg > 1:9075204/1‑51 (MQ=255) gctgctGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAgg > 1:9347670/1‑51 (MQ=255) gctgctGGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAgg < 1:67865/51‑1 (MQ=255) ctgctgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGt > 1:7757056/1‑51 (MQ=255) ctgctgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGt > 1:2039803/1‑51 (MQ=255) ctgctgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGt > 1:2205877/1‑51 (MQ=255) ctgctgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGt > 1:3442200/1‑51 (MQ=255) ctgctgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGt > 1:3823986/1‑51 (MQ=255) tgctgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTa > 1:3623455/1‑51 (MQ=255) tgctgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTa > 1:8297440/1‑51 (MQ=255) tgctgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTa > 1:2215020/1‑51 (MQ=255) gctgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTaa > 1:10174766/1‑51 (MQ=255) tgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATg > 1:7621356/1‑51 (MQ=255) tgGCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATg > 1:3927716/1‑51 (MQ=255) ggCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGa > 1:6190041/1‑51 (MQ=255) ggCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGa > 1:10465010/1‑51 (MQ=255) gCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGAc > 1:5186794/1‑51 (MQ=255) gCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGAc < 1:8916791/51‑1 (MQ=255) gCATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGAc > 1:1560270/1‑51 (MQ=255) cATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACg > 1:348454/1‑51 (MQ=255) cATATTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACg < 1:6126861/51‑1 (MQ=255) atatTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTATAGGTAATGACGa > 1:53425/1‑51 (MQ=38) atatTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGa < 1:4978447/51‑1 (MQ=255) atatTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGa > 1:4930566/1‑51 (MQ=255) atatTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGa > 1:4330989/1‑51 (MQ=255) atatTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGa < 1:3761027/51‑1 (MQ=255) atatTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGa < 1:6124564/51‑1 (MQ=255) tatTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGAt < 1:6381827/51‑1 (MQ=255) tatTCCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGAt < 1:6716423/51‑1 (MQ=255) | CGCGCTCGCGCAAGAATATGCAAATGCGGAAAGTGCTGCTGGCATATTTCCACCAGCTTCATGGTGTCTTCCGGCTCGTTACAGGTAATGACGATA > REL606/3407017‑3407112 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |