| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 875,094 | G→C | 100% | H65D (CAT→GAT) | deoR ← | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 875,094 | 0 | G | C | 100.0% | 314.2 / NA | 82 | H65D (CAT→GAT) | deoR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (36/46); total (36/46) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGA > REL606/875046‑875141 | ggCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtcgc > 1:10251336/1‑51 (MQ=255) gCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtcgct > 1:4044990/1‑51 (MQ=255) cGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtcgctg > 1:5433766/1‑51 (MQ=255) cGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtcgctg > 1:2968893/1‑51 (MQ=255) gTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtcgctgg > 1:2866592/1‑51 (MQ=255) ttttCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCa < 1:3237575/51‑1 (MQ=255) ttttCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCa > 1:7544304/1‑51 (MQ=255) ttttCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCa < 1:5281772/51‑1 (MQ=255) ttttCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCa > 1:9446476/1‑51 (MQ=255) ttcttcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACt > 1:8399708/1‑51 (MQ=255) tcttcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTg < 1:5835141/51‑1 (MQ=255) tcttcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTg < 1:9089711/51‑1 (MQ=255) tcttcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTg < 1:8330589/51‑1 (MQ=255) tcttcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTg < 1:7824227/51‑1 (MQ=255) tcttcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTg < 1:2063300/51‑1 (MQ=255) tcttcCACCAGGCGGGATTTTTGATCGCTTAACAGGGAAtcgctgg > 1:6737972/1‑46 (MQ=39) cttcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTgc < 1:9456531/51‑1 (MQ=255) tcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTgcgc < 1:5383747/51‑1 (MQ=255) tcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTgcgc < 1:10838538/51‑1 (MQ=255) tcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTgcgc > 1:9902167/1‑51 (MQ=255) ccaccaGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGcgcg < 1:6701745/51‑1 (MQ=255) ccaccaGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGcgcg < 1:7258283/51‑1 (MQ=255) accaGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGt < 1:5450052/51‑1 (MQ=255) accaGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGt < 1:605457/51‑1 (MQ=255) ccaGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGtt > 1:6976454/1‑51 (MQ=255) ccaGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGtt < 1:7106872/51‑1 (MQ=255) ccaGGCGGGATTTTGGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGtt < 1:10688203/51‑1 (MQ=255) caGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTc > 1:10256459/1‑51 (MQ=255) caGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTc > 1:2500909/1‑51 (MQ=255) aGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGcgcg < 1:6914952/46‑1 (MQ=255) aGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTcc < 1:6264347/51‑1 (MQ=255) aGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTcc < 1:8213301/51‑1 (MQ=255) aGGCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTcc > 1:2649016/1‑51 (MQ=255) aGGCGGGATTTTTGATCGCCTAACAGGTAATCGCTGGCACTGCGCGGTTcc < 1:7221434/51‑1 (MQ=255) ggCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCa > 1:1604950/1‑51 (MQ=255) ggCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCa > 1:8397285/1‑51 (MQ=255) gCGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAg < 1:3117558/51‑1 (MQ=255) cGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGa > 1:9231605/1‑51 (MQ=255) cGGGATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGa < 1:3281620/51‑1 (MQ=255) gggATTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGaa < 1:886797/51‑1 (MQ=255) aTTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACaa < 1:6463287/51‑1 (MQ=255) aTTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACaa < 1:3205702/51‑1 (MQ=255) aTTTTTGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACaa < 1:4030724/51‑1 (MQ=255) tttttGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAat > 1:3421928/1‑51 (MQ=255) tttttGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAat > 1:4600866/1‑51 (MQ=255) ttttGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAata > 1:9978099/1‑51 (MQ=255) ttttGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAata > 1:8819609/1‑51 (MQ=255) ttttGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAata > 1:9689095/1‑51 (MQ=255) ttttGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAata > 1:8222835/1‑51 (MQ=255) ttttGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAata > 1:2169272/1‑51 (MQ=255) tttGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAatat > 1:5936384/1‑51 (MQ=255) ttGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAAtata < 1:6096750/51‑1 (MQ=255) tGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAg < 1:2352872/51‑1 (MQ=255) tGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAg > 1:4762946/1‑51 (MQ=255) tGATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAg < 1:289601/51‑1 (MQ=255) gATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgc < 1:6463478/51‑1 (MQ=255) gATCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgc > 1:9371007/1‑51 (MQ=255) aTCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgcc < 1:3420726/51‑1 (MQ=255) aTCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgcc > 1:5299279/1‑51 (MQ=255) tCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgccg > 1:5607894/1‑51 (MQ=255) tCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgccg < 1:4356753/51‑1 (MQ=255) tCGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgccg < 1:3814454/51‑1 (MQ=255) cGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgccgc > 1:7096720/1‑51 (MQ=255) cGCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgccg < 1:449540/50‑1 (MQ=255) gCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgccgcc > 1:6989268/1‑51 (MQ=255) gCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgccgcc < 1:4994945/51‑1 (MQ=255) gCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgccgcc < 1:1642696/51‑1 (MQ=255) gCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgccgcc < 1:10773020/51‑1 (MQ=255) gCTTAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAgccgcc > 1:2628950/1‑51 (MQ=255) ttAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGa < 1:2840769/51‑1 (MQ=255) ttAACAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGa > 1:3391661/1‑51 (MQ=255) aaCAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGc > 1:2956990/1‑51 (MQ=255) aaCAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGc > 1:6685788/1‑51 (MQ=255) aaCAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGc < 1:5752463/51‑1 (MQ=255) aCAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCa > 1:9530640/1‑51 (MQ=255) aCAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCa > 1:2176591/1‑51 (MQ=255) aCAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCa > 1:9200569/1‑51 (MQ=255) cAGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCaa < 1:3878212/51‑1 (MQ=255) aGGTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCaaa > 1:1260824/1‑51 (MQ=255) ggTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCaaaa < 1:4651162/51‑1 (MQ=255) ggTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCaaaa < 1:8331962/51‑1 (MQ=255) gTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAac < 1:3160640/51‑1 (MQ=255) gTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAac > 1:6230467/1‑51 (MQ=255) gTAATCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAac < 1:4635726/51‑1 (MQ=255) aaTCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAacga < 1:1986052/51‑1 (MQ=255) aaTCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAacga < 1:8444891/51‑1 (MQ=255) aaTCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAacga > 1:6318129/1‑51 (MQ=255) aaTCGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAacga > 1:2741620/1‑51 (MQ=255) | GGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGAACAATATAGCCGCCGAGCAAAACGA > REL606/875046‑875141 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |